Figure S2. Assessment of reads using FastQC after quality control. a) Quality of reads per base after adaptive window trimming using a quality average threshold of 20 and a minimum length threshold of 20. The central red line is the median value, the yellow box represents the interquartile range (25â75%), the upper and lower whiskers represent the 10 and 90% points, respectively, and the blue line represents the mean base quality. b) Sequence content across all bases. c) Distribution of the mean quality scores over all sequenced reads. d) Length distributions of all sequenced reads. (PDF 23882 kb
Correlation of transcriptomes among genes from 10 conditions with 2 replicates each. Left: Hierarchi...
Figure S6. Metabolic pathway of the Terpenoid bakcone biosynthesis for the unigenes identified in C....
Information about RNA-Seq data obtained by Illumina Hi-Seq 2500 sequencing. 1Raw seq. Reads no.: Tot...
Figure S1. Assessment of reads by FastQC before quality control. a) Quality of raw-reads per base. T...
Table S2. Summary of database matches (specific values) for C. gigantea unigenes. (DOCX 15 kb
Table S1. Summary of assembled contigs, scaffolds and unigenes properties for the C. gigantea unigen...
Table S3. Database matches (full results) for C. gigantea unigenes. (XLSX 1763 kb
Figure S10. Alignment of the conserved RxR and DDxxD motifs and motifs variation among 121 TPS seque...
Figure S9. Conserved motifs in LRR-RLK domain from C. gigantea transcriptome and their consensus seq...
Figure S12. Test of differential gene expresssion among selected genes from three gene families (USP...
Table S8. Characteristics of the transcriptome assemblies from related conifer species and re-analys...
Figure S11. Gel electrophoresis of 39 primers for real-time PCR with cDNA as template (a and b) and ...
Table S7. Functional enrichment analysis of the specific gene families from C. gigantea. The full li...
Limma DE gene table of the spots with foreground different to background. Table S2. EdgeR DE gene ta...
Figure S8. Multiple sequence alignment (MSA) of the USPA-like domains of the putative USPA protein. ...
Correlation of transcriptomes among genes from 10 conditions with 2 replicates each. Left: Hierarchi...
Figure S6. Metabolic pathway of the Terpenoid bakcone biosynthesis for the unigenes identified in C....
Information about RNA-Seq data obtained by Illumina Hi-Seq 2500 sequencing. 1Raw seq. Reads no.: Tot...
Figure S1. Assessment of reads by FastQC before quality control. a) Quality of raw-reads per base. T...
Table S2. Summary of database matches (specific values) for C. gigantea unigenes. (DOCX 15 kb
Table S1. Summary of assembled contigs, scaffolds and unigenes properties for the C. gigantea unigen...
Table S3. Database matches (full results) for C. gigantea unigenes. (XLSX 1763 kb
Figure S10. Alignment of the conserved RxR and DDxxD motifs and motifs variation among 121 TPS seque...
Figure S9. Conserved motifs in LRR-RLK domain from C. gigantea transcriptome and their consensus seq...
Figure S12. Test of differential gene expresssion among selected genes from three gene families (USP...
Table S8. Characteristics of the transcriptome assemblies from related conifer species and re-analys...
Figure S11. Gel electrophoresis of 39 primers for real-time PCR with cDNA as template (a and b) and ...
Table S7. Functional enrichment analysis of the specific gene families from C. gigantea. The full li...
Limma DE gene table of the spots with foreground different to background. Table S2. EdgeR DE gene ta...
Figure S8. Multiple sequence alignment (MSA) of the USPA-like domains of the putative USPA protein. ...
Correlation of transcriptomes among genes from 10 conditions with 2 replicates each. Left: Hierarchi...
Figure S6. Metabolic pathway of the Terpenoid bakcone biosynthesis for the unigenes identified in C....
Information about RNA-Seq data obtained by Illumina Hi-Seq 2500 sequencing. 1Raw seq. Reads no.: Tot...