Figure S3. Relation between FDR and p-value cutoff. Each panel shows the relation between FDR and p-value cutoff, with the left column for TCGA data, and the right column for external datasets. (PDF 108 kb
Table S12. Dominant and redundant features of enrichment in 381 functional classes of REMBRANDT data...
Summary of results from the FDR analysis. The median value for the number of true positives detected...
Table S8. Dominant and redundant features of enrichment in 278 functional classes of METABRIC data. ...
Figure S1. Bivariate GSEA plot when (A) F1 is superior than F2 (B) F1 and F2 both provide indispensa...
Table S1. Number of significantly enriched gene sets using top 100 genes from each feature score. Th...
Table S5. Mann-Whitney p-values of 16 pairwise random walk comparisons among the 676 functional cate...
Table S4. Dominant and combinatorial features of enrichment in 434 functional classes of TCGA breast...
Figure S2. Correlation of mutual information scores across platforms. Top and bottom panels show the...
Table S2. Parameters settings for analysis presented in this study. The table shows the parameters u...
Table S13. Dominant and redundant features of enrichment in 161 reduced functional classes of REMBRA...
Figure S4. Overlap between top ranking genes from TCGA and external data. Top panels show the overla...
Table S9. Dominant and redundant features of enrichment in 143 reduced functional classes of METABRI...
Table S6. Dominant and combinatorial features of enrichment in 676 functional classes of TCGA GBM da...
Table S11. Number of significant gene set overlap between TCGA breast cancer and METABRIC data and t...
Table S15. Number of significant gene set overlap between TCGA GBM and REMBRANDT data and their comb...
Table S12. Dominant and redundant features of enrichment in 381 functional classes of REMBRANDT data...
Summary of results from the FDR analysis. The median value for the number of true positives detected...
Table S8. Dominant and redundant features of enrichment in 278 functional classes of METABRIC data. ...
Figure S1. Bivariate GSEA plot when (A) F1 is superior than F2 (B) F1 and F2 both provide indispensa...
Table S1. Number of significantly enriched gene sets using top 100 genes from each feature score. Th...
Table S5. Mann-Whitney p-values of 16 pairwise random walk comparisons among the 676 functional cate...
Table S4. Dominant and combinatorial features of enrichment in 434 functional classes of TCGA breast...
Figure S2. Correlation of mutual information scores across platforms. Top and bottom panels show the...
Table S2. Parameters settings for analysis presented in this study. The table shows the parameters u...
Table S13. Dominant and redundant features of enrichment in 161 reduced functional classes of REMBRA...
Figure S4. Overlap between top ranking genes from TCGA and external data. Top panels show the overla...
Table S9. Dominant and redundant features of enrichment in 143 reduced functional classes of METABRI...
Table S6. Dominant and combinatorial features of enrichment in 676 functional classes of TCGA GBM da...
Table S11. Number of significant gene set overlap between TCGA breast cancer and METABRIC data and t...
Table S15. Number of significant gene set overlap between TCGA GBM and REMBRANDT data and their comb...
Table S12. Dominant and redundant features of enrichment in 381 functional classes of REMBRANDT data...
Summary of results from the FDR analysis. The median value for the number of true positives detected...
Table S8. Dominant and redundant features of enrichment in 278 functional classes of METABRIC data. ...
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