Additional file 10: of MGSEA â a multivariate Gene set enrichment analysis

Additional file 4: of MGSEA – a multivariate Gene set enrichment analysis

Khong-Loon Tiong (6477809)
Chen-Hsiang Yeang (37093)

March 2019

Table S1. Number of significantly enriched gene sets using top 100 genes from each feature score. Th...

Additional file 13: of MGSEA â a multivariate Gene set enrichment analysis

Khong-Loon Tiong (6477809)
Chen-Hsiang Yeang (37093)

March 2019

Table S9. Dominant and redundant features of enrichment in 143 reduced functional classes of METABRI...

Additional file 2: of polyClustR: defining communities of reconciled cancer subtypes with biological and prognostic significance

Katherine Eason (5290724)
Gift Nyamundanda (741357)
Anguraj Sadanandam (412248)

May 2018

Figure S2. Gene Set Enrichment Analysis (GSEA) analysis between subtypes in breast cancer. (A-F) GSE...

Additional file 14: of MGSEA â a multivariate Gene set enrichment analysis

Khong-Loon Tiong (6477809)
Chen-Hsiang Yeang (37093)

March 2019

Table S10. Identities of significant gene set overlap between TCGA breast cancer and METABRIC data. ...

Additional file 15: of MGSEA â a multivariate Gene set enrichment analysis

Khong-Loon Tiong (6477809)
Chen-Hsiang Yeang (37093)

March 2019

Table S11. Number of significant gene set overlap between TCGA breast cancer and METABRIC data and t...

Additional file 18: of MGSEA â a multivariate Gene set enrichment analysis

Khong-Loon Tiong (6477809)
Chen-Hsiang Yeang (37093)

March 2019

Table S14. Identities of significant gene set overlap between TCGA GBM and REMBRANDT data. The table...

Additional file 2: of MGSEA – a multivariate Gene set enrichment analysis

Khong-Loon Tiong (6477809)
Chen-Hsiang Yeang (37093)

March 2019

Figure S2. Correlation of mutual information scores across platforms. Top and bottom panels show the...

Additional file 19: of MGSEA â a multivariate Gene set enrichment analysis

Khong-Loon Tiong (6477809)
Chen-Hsiang Yeang (37093)

March 2019

Table S15. Number of significant gene set overlap between TCGA GBM and REMBRANDT data and their comb...

Additional file 7: of MGSEA â a multivariate Gene set enrichment analysis

Khong-Loon Tiong (6477809)
Chen-Hsiang Yeang (37093)

March 2019

Table S4. Dominant and combinatorial features of enrichment in 434 functional classes of TCGA breast...

Additional file 11: of MGSEA â a multivariate Gene set enrichment analysis

Khong-Loon Tiong (6477809)
Chen-Hsiang Yeang (37093)

March 2019

Table S7. Subtype-specific CNV and their values in TCGA and external dataset. The table show the pre...

Additional file 1: of MGSEA â a multivariate Gene set enrichment analysis

Khong-Loon Tiong (6477809)
Chen-Hsiang Yeang (37093)

March 2019

Figure S1. Bivariate GSEA plot when (A) F1 is superior than F2 (B) F1 and F2 both provide indispensa...

Additional file 9: of MGSEA â a multivariate Gene set enrichment analysis

Khong-Loon Tiong (6477809)
Chen-Hsiang Yeang (37093)

March 2019

Table S6. Dominant and combinatorial features of enrichment in 676 functional classes of TCGA GBM da...

Additional file 10: of The molecular landscape of premenopausal breast cancer

Serena Liao (3582692)
Ryan Hartmaier (109111)
Kandace McGuire (3582695)
Shannon Puhalla (3582689)
Soumya Luthra (732484)
Uma Chandran (732485)
Tianzhou Ma (3582698)
Rohit Bhargava (562035)
Francesmary Modugno (757958)
Nancy Davidson (3512738)
Steve Benz (3582686)
Adrian Lee (3161067)
George Tseng (150934)
Steffi Oesterreich (109122)

August 2015

PARADIGM analysis in Molecular Taxonomy of Breast Cancer International Consortium (METABRIC). Pathwa...

Additional file 7: of The molecular landscape of premenopausal breast cancer

Serena Liao (3582692)
Ryan Hartmaier (109111)
Kandace McGuire (3582695)
Shannon Puhalla (3582689)
Soumya Luthra (732484)
Uma Chandran (732485)
Tianzhou Ma (3582698)
Rohit Bhargava (562035)
Francesmary Modugno (757958)
Nancy Davidson (3512738)
Steve Benz (3582686)
Adrian Lee (3161067)
George Tseng (150934)
Steffi Oesterreich (109122)

August 2015

PARADIGM analysis in The Cancer Genome Atlas (TCGA). Table S1. Pathways detected by gene set enrichm...

Additional file 8: of MGSEA â a multivariate Gene set enrichment analysis

Khong-Loon Tiong (6477809)
Chen-Hsiang Yeang (37093)

March 2019

Table S5. Mann-Whitney p-values of 16 pairwise random walk comparisons among the 676 functional cate...

Additional file 4: of MGSEA – a multivariate Gene set enrichment analysis

Khong-Loon Tiong (6477809)
Chen-Hsiang Yeang (37093)

March 2019

Table S1. Number of significantly enriched gene sets using top 100 genes from each feature score. Th...

Additional file 13: of MGSEA â a multivariate Gene set enrichment analysis

Khong-Loon Tiong (6477809)
Chen-Hsiang Yeang (37093)

March 2019

Table S9. Dominant and redundant features of enrichment in 143 reduced functional classes of METABRI...

Additional file 2: of polyClustR: defining communities of reconciled cancer subtypes with biological and prognostic significance

Katherine Eason (5290724)
Gift Nyamundanda (741357)
Anguraj Sadanandam (412248)

May 2018

Figure S2. Gene Set Enrichment Analysis (GSEA) analysis between subtypes in breast cancer. (A-F) GSE...

Additional file 14: of MGSEA â a multivariate Gene set enrichment analysis

Khong-Loon Tiong (6477809)
Chen-Hsiang Yeang (37093)

March 2019

Table S10. Identities of significant gene set overlap between TCGA breast cancer and METABRIC data. ...

Additional file 15: of MGSEA â a multivariate Gene set enrichment analysis

Khong-Loon Tiong (6477809)
Chen-Hsiang Yeang (37093)

March 2019

Table S11. Number of significant gene set overlap between TCGA breast cancer and METABRIC data and t...

Additional file 18: of MGSEA â a multivariate Gene set enrichment analysis

Khong-Loon Tiong (6477809)
Chen-Hsiang Yeang (37093)

March 2019

Table S14. Identities of significant gene set overlap between TCGA GBM and REMBRANDT data. The table...

Additional file 2: of MGSEA – a multivariate Gene set enrichment analysis

Khong-Loon Tiong (6477809)
Chen-Hsiang Yeang (37093)

March 2019

Figure S2. Correlation of mutual information scores across platforms. Top and bottom panels show the...

Additional file 19: of MGSEA â a multivariate Gene set enrichment analysis

Khong-Loon Tiong (6477809)
Chen-Hsiang Yeang (37093)

March 2019

Table S15. Number of significant gene set overlap between TCGA GBM and REMBRANDT data and their comb...

Additional file 7: of MGSEA â a multivariate Gene set enrichment analysis

Khong-Loon Tiong (6477809)
Chen-Hsiang Yeang (37093)

March 2019

Table S4. Dominant and combinatorial features of enrichment in 434 functional classes of TCGA breast...

Additional file 11: of MGSEA â a multivariate Gene set enrichment analysis

Khong-Loon Tiong (6477809)
Chen-Hsiang Yeang (37093)

March 2019

Table S7. Subtype-specific CNV and their values in TCGA and external dataset. The table show the pre...

Additional file 1: of MGSEA â a multivariate Gene set enrichment analysis

Khong-Loon Tiong (6477809)
Chen-Hsiang Yeang (37093)

March 2019

Figure S1. Bivariate GSEA plot when (A) F1 is superior than F2 (B) F1 and F2 both provide indispensa...

Additional file 9: of MGSEA â a multivariate Gene set enrichment analysis

Khong-Loon Tiong (6477809)
Chen-Hsiang Yeang (37093)

March 2019

Table S6. Dominant and combinatorial features of enrichment in 676 functional classes of TCGA GBM da...

Additional file 10: of The molecular landscape of premenopausal breast cancer

Serena Liao (3582692)
Ryan Hartmaier (109111)
Kandace McGuire (3582695)
Shannon Puhalla (3582689)
Soumya Luthra (732484)
Uma Chandran (732485)
Tianzhou Ma (3582698)
Rohit Bhargava (562035)
Francesmary Modugno (757958)
Nancy Davidson (3512738)
Steve Benz (3582686)
Adrian Lee (3161067)
George Tseng (150934)
Steffi Oesterreich (109122)

August 2015

PARADIGM analysis in Molecular Taxonomy of Breast Cancer International Consortium (METABRIC). Pathwa...

Additional file 7: of The molecular landscape of premenopausal breast cancer

Serena Liao (3582692)
Ryan Hartmaier (109111)
Kandace McGuire (3582695)
Shannon Puhalla (3582689)
Soumya Luthra (732484)
Uma Chandran (732485)
Tianzhou Ma (3582698)
Rohit Bhargava (562035)
Francesmary Modugno (757958)
Nancy Davidson (3512738)
Steve Benz (3582686)
Adrian Lee (3161067)
George Tseng (150934)
Steffi Oesterreich (109122)

August 2015

PARADIGM analysis in The Cancer Genome Atlas (TCGA). Table S1. Pathways detected by gene set enrichm...

Additional file 8: of MGSEA â a multivariate Gene set enrichment analysis

Khong-Loon Tiong (6477809)
Chen-Hsiang Yeang (37093)

March 2019

Table S5. Mann-Whitney p-values of 16 pairwise random walk comparisons among the 676 functional cate...

Additional file 4: of MGSEA – a multivariate Gene set enrichment analysis

Khong-Loon Tiong (6477809)
Chen-Hsiang Yeang (37093)

March 2019

Table S1. Number of significantly enriched gene sets using top 100 genes from each feature score. Th...

Additional file 13: of MGSEA â a multivariate Gene set enrichment analysis

Khong-Loon Tiong (6477809)
Chen-Hsiang Yeang (37093)

March 2019

Table S9. Dominant and redundant features of enrichment in 143 reduced functional classes of METABRI...

Additional file 2: of polyClustR: defining communities of reconciled cancer subtypes with biological and prognostic significance

Katherine Eason (5290724)
Gift Nyamundanda (741357)
Anguraj Sadanandam (412248)

May 2018

Figure S2. Gene Set Enrichment Analysis (GSEA) analysis between subtypes in breast cancer. (A-F) GSE...

Additional file 10: of MGSEA â a multivariate Gene set enrichment analysis

Abstract

Extracted data

Additional file 10: of MGSEA â a multivariate Gene set enrichment analysis

Abstract

Extracted data

Related items

Related items

Additional file 10: of MGSEA â a multivariate Gene set enrichment analysis

Abstract

Extracted data

Additional file 10: of MGSEA â a multivariate Gene set enrichment analysis

Abstract

Extracted data

Related items

Related items

Additional file 10: of MGSEA â a multivariate Gene set enrichment analysis

Additional file 10: of MGSEA â a multivariate Gene set enrichment analysis