Additional file 1: of Flutamide-induced alterations in transcriptional profiling of neonatal porcine ovaries

Additional file 1: of Differentially expressed non-coding RNAs induced by transmissible gastroenteritis virus potentially regulate inflammation and NF-ÎşB pathway in porcine intestinal epithelial cell line

Xuelian Ma (5852510)
Xiaomin Zhao (566041)
Zhichao Zhang (530603)
Jianxiong Guo (4571830)
Lijuan Guan (3740323)
Juejun Li (5852513)
Mi Mi (5852516)
Yong Huang (15745)
Dewen Tong (93139)

October 2018

Table S1. The detailed information of differentially expressed mRNAs. Table S2. The detailed informa...

Additional file 1: of Polymorphism of mitochondrial tRNA genes associated with the number of pigs born alive

Dan Wang (34472)
Chao Ning (1781215)
Hai Xiang (3913597)
Xianrui Zheng (140535)
Minghua Kong (6007763)
Tao Yin (401660)
Jianfeng Liu (122580)
Xingbo Zhao (3913603)

November 2018

Table S1. Detail information of used pigs. Table S2. PCR primers used for amplification of pig mitog...

Additional file 1: Table S1. of Genomic regions associated with host response to porcine reproductive and respiratory syndrome vaccination and co-infection in nursery pigs

Jenelle Dunkelberger (3440393)
Nick SerĂŁo (3552065)
Ziqing Weng (3572444)
Emily Waide (4589698)
Megan Niederwerder (4589704)
Maureen Kerrigan (4589701)
Joan Lunney (3570092)
Raymond Rowland (3587747)
Jack Dekkers (3439892)

November 2017

Number of independent principal components per chromosome required to capture 99.5% of the genetic v...

Additional file 3: of Flutamide-induced alterations in transcriptional profiling of neonatal porcine ovaries

Katarzyna Knapczyk-Stwora (6553634)
Anna Nynca (5845943)
Renata Ciereszko (5845961)
Lukasz Paukszto (5845946)
Jan Jastrzebski (5845958)
Elzbieta Czaja (6553637)
Patrycja Witek (6553640)
Marek Koziorowski (6553643)
Maria Slomczynska (6553646)

April 2019

An overview of all differentially expressed lncRNAs [Pâ<â0.05; (log2) fold change] in the ovarie...

Additional file 5: of Flutamide-induced alterations in transcriptional profiling of neonatal porcine ovaries

Katarzyna Knapczyk-Stwora (6553634)
Anna Nynca (5845943)
Renata Ciereszko (5845961)
Lukasz Paukszto (5845946)
Jan Jastrzebski (5845958)
Elzbieta Czaja (6553637)
Patrycja Witek (6553640)
Marek Koziorowski (6553643)
Maria Slomczynska (6553646)

April 2019

Differentially expressed lncRNAs (DELs; P-adjusted < 0.05 and log2 fold change ≥1.0) in the ovaries ...

Additional file 1: Table S1. of Gene expression analysis of pig cumulus-oocyte complexes stimulated in vitro with follicle stimulating hormone or epidermal growth factor-like peptides

Milan Blaha (3503381)
Lucie Nemcova (3503384)
Katerina Kepkova (3503375)
Petr Vodicka (3503378)
Radek Prochazka (3503387)

October 2015

List of primers used for microarray data analysis verification. List and data of primers used in qRT...

Additional file 2: Table S2. of Gene expression analysis of pig cumulus-oocyte complexes stimulated in vitro with follicle stimulating hormone or epidermal growth factor-like peptides

Milan Blaha (3503381)
Lucie Nemcova (3503384)
Katerina Kepkova (3503375)
Petr Vodicka (3503378)
Radek Prochazka (3503387)

October 2015

List of over- and underexpressed genes in cumulus cells stimulated with FSH or AREG/EREG depicted in...

Additional file 2: of Cell type-specific analysis of transcriptome changes in the porcine endometrium on Day 12 of pregnancy

Shuqin Zeng (5392808)
Jochen Bick (5392805)
Susanne Ulbrich (4615648)
Stefan Bauersachs (130224)

June 2018

Table S2. Differentially expressed genes in luminal epithelium, glandular epithelium, stroma, and co...

Additional file 1: Table S1. of Expression of microRNAs and isomiRs in the porcine endometrium: implications for gene regulation at the maternal-conceptus interface

Kamil Krawczynski (3581273)
Stefan Bauersachs (130224)
Zaneta Reliszko (3581276)
Alexander Graf (157514)
Monika Kaczmarek (3580151)

November 2015

Average values representing read counts after subsequent steps of pre-analysis of raw data obtained ...

Additional file 2: Table S2. of The oviductal transcriptome is influenced by a local ovarian effect in the sow

Rebeca López-Úbeda (758544)
Marta Muñoz (514443)
Luis Vieira (3550379)
Ronald Hunter (3550373)
Pilar Coy (679479)
Sebastian Canovas (3550376)

July 2016

Primer sequences used to amplify specific fragments of porcine transcripts. (DOCX 14 kb

Additional file 1: Table S1. of Biallelic modification of IL2RG leads to severe combined immunodeficiency in pigs

Jung-Taek Kang (3429896)
Bumrae Cho (304017)
Junghyun Ryu (3429890)
Caitlin Ray (3429908)
Eun-Jin Lee (2299186)
Yun-Jin Yun (3429902)
SunMi Ahn (3429899)
JinSeok Lee (3429905)
Dal-Young Ji (3429887)
Nathaniel Jue (3429884)
Sherrie Clark-Deener (550129)
Kiho Lee (1366734)
Kwang-Wook Park (3429893)

November 2016

Oligos used to introduce sgRNA into px330. Each pair of forward and reverse primers were annealing a...

Additional file 2: Table S2. of Functional development of the adult ovine mammary glandâinsights from gene expression profiling

Amy Paten (3474197)
Elizabeth Duncan (810980)
Sarah Pain (3474200)
Sam Peterson (3474194)
Paul Kenyon (3474206)
Hugh Blair (3474203)
Peter Dearden (65392)

October 2015

RNA-seq data for genes more highly expressed during late pregnancy. Table S3: RNA-seq data for genes...

Additional file 3: of Necrotizing enterocolitis is associated with acute brain responses in preterm pigs

Jing Sun (141206)
Xiaoyu Pan (31050)
Line Christiansen (5360555)
Xiao-Long Yuan (4619179)
Kerstin Skovgaard (429097)
Dereck Chatterton (5360558)
Sanne Kaalund (5360549)
Fei Gao (29262)
Per Sangild (5360552)
Stanislava Pankratova (2423647)

June 2018

Table S2. Differentially expressed genes (DEGs) between Co-NEC and No-NEC groups. Listed are all the...

Additional file 2: of A genome-wide landscape of mRNAs, lncRNAs, and circRNAs during subcutaneous adipogenesis in pigs

Xin Liu (43569)
Kaiqing Liu (3391595)
Baosen Shan (5919614)
Shengjuan Wei (5919617)
Dongfeng Li (192917)
Haiyin Han (5919620)
Wei Wei (21173)
Jie Chen (5892)
Honglin Liu (108352)
Lifan Zhang (391216)

November 2018

List of expressed genes during porcine preadipocyte differentiation. Gene ID, FPKM or SRPBM value, g...

Additional file 3: of Role of AMPK signalling pathway during compensatory growth in pigs

Maria Ballester (103767)
Marcel Amills (168991)
Olga González-Rodríguez (4349749)
Tainã Cardoso (3585575)
Mariam Pascual (5755100)
Rayner González-Prendes (4349755)
Núria Panella-Riera (5755103)
Isabel Díaz (2698609)
Joan Tibau (3779230)
Raquel Quintanilla (168993)

September 2018

Table S3. List of genes differentially expressed (p-value adjusted for multiple testing 2 (i.e. ǀlo...

Additional file 1: of Differentially expressed non-coding RNAs induced by transmissible gastroenteritis virus potentially regulate inflammation and NF-ÎşB pathway in porcine intestinal epithelial cell line

Xuelian Ma (5852510)
Xiaomin Zhao (566041)
Zhichao Zhang (530603)
Jianxiong Guo (4571830)
Lijuan Guan (3740323)
Juejun Li (5852513)
Mi Mi (5852516)
Yong Huang (15745)
Dewen Tong (93139)

October 2018

Table S1. The detailed information of differentially expressed mRNAs. Table S2. The detailed informa...

Additional file 1: of Polymorphism of mitochondrial tRNA genes associated with the number of pigs born alive

Dan Wang (34472)
Chao Ning (1781215)
Hai Xiang (3913597)
Xianrui Zheng (140535)
Minghua Kong (6007763)
Tao Yin (401660)
Jianfeng Liu (122580)
Xingbo Zhao (3913603)

November 2018

Table S1. Detail information of used pigs. Table S2. PCR primers used for amplification of pig mitog...

Additional file 1: Table S1. of Genomic regions associated with host response to porcine reproductive and respiratory syndrome vaccination and co-infection in nursery pigs

Jenelle Dunkelberger (3440393)
Nick SerĂŁo (3552065)
Ziqing Weng (3572444)
Emily Waide (4589698)
Megan Niederwerder (4589704)
Maureen Kerrigan (4589701)
Joan Lunney (3570092)
Raymond Rowland (3587747)
Jack Dekkers (3439892)

November 2017

Number of independent principal components per chromosome required to capture 99.5% of the genetic v...

Additional file 3: of Flutamide-induced alterations in transcriptional profiling of neonatal porcine ovaries

Katarzyna Knapczyk-Stwora (6553634)
Anna Nynca (5845943)
Renata Ciereszko (5845961)
Lukasz Paukszto (5845946)
Jan Jastrzebski (5845958)
Elzbieta Czaja (6553637)
Patrycja Witek (6553640)
Marek Koziorowski (6553643)
Maria Slomczynska (6553646)

April 2019

An overview of all differentially expressed lncRNAs [Pâ<â0.05; (log2) fold change] in the ovarie...

Additional file 5: of Flutamide-induced alterations in transcriptional profiling of neonatal porcine ovaries

Katarzyna Knapczyk-Stwora (6553634)
Anna Nynca (5845943)
Renata Ciereszko (5845961)
Lukasz Paukszto (5845946)
Jan Jastrzebski (5845958)
Elzbieta Czaja (6553637)
Patrycja Witek (6553640)
Marek Koziorowski (6553643)
Maria Slomczynska (6553646)

April 2019

Differentially expressed lncRNAs (DELs; P-adjusted < 0.05 and log2 fold change ≥1.0) in the ovaries ...

Additional file 1: Table S1. of Gene expression analysis of pig cumulus-oocyte complexes stimulated in vitro with follicle stimulating hormone or epidermal growth factor-like peptides

Milan Blaha (3503381)
Lucie Nemcova (3503384)
Katerina Kepkova (3503375)
Petr Vodicka (3503378)
Radek Prochazka (3503387)

October 2015

List of primers used for microarray data analysis verification. List and data of primers used in qRT...

Additional file 2: Table S2. of Gene expression analysis of pig cumulus-oocyte complexes stimulated in vitro with follicle stimulating hormone or epidermal growth factor-like peptides

Milan Blaha (3503381)
Lucie Nemcova (3503384)
Katerina Kepkova (3503375)
Petr Vodicka (3503378)
Radek Prochazka (3503387)

October 2015

List of over- and underexpressed genes in cumulus cells stimulated with FSH or AREG/EREG depicted in...

Additional file 2: of Cell type-specific analysis of transcriptome changes in the porcine endometrium on Day 12 of pregnancy

Shuqin Zeng (5392808)
Jochen Bick (5392805)
Susanne Ulbrich (4615648)
Stefan Bauersachs (130224)

June 2018

Table S2. Differentially expressed genes in luminal epithelium, glandular epithelium, stroma, and co...

Additional file 1: Table S1. of Expression of microRNAs and isomiRs in the porcine endometrium: implications for gene regulation at the maternal-conceptus interface

Kamil Krawczynski (3581273)
Stefan Bauersachs (130224)
Zaneta Reliszko (3581276)
Alexander Graf (157514)
Monika Kaczmarek (3580151)

November 2015

Average values representing read counts after subsequent steps of pre-analysis of raw data obtained ...

Additional file 2: Table S2. of The oviductal transcriptome is influenced by a local ovarian effect in the sow

Rebeca López-Úbeda (758544)
Marta Muñoz (514443)
Luis Vieira (3550379)
Ronald Hunter (3550373)
Pilar Coy (679479)
Sebastian Canovas (3550376)

July 2016

Primer sequences used to amplify specific fragments of porcine transcripts. (DOCX 14 kb

Additional file 1: Table S1. of Biallelic modification of IL2RG leads to severe combined immunodeficiency in pigs

Jung-Taek Kang (3429896)
Bumrae Cho (304017)
Junghyun Ryu (3429890)
Caitlin Ray (3429908)
Eun-Jin Lee (2299186)
Yun-Jin Yun (3429902)
SunMi Ahn (3429899)
JinSeok Lee (3429905)
Dal-Young Ji (3429887)
Nathaniel Jue (3429884)
Sherrie Clark-Deener (550129)
Kiho Lee (1366734)
Kwang-Wook Park (3429893)

November 2016

Oligos used to introduce sgRNA into px330. Each pair of forward and reverse primers were annealing a...

Additional file 2: Table S2. of Functional development of the adult ovine mammary glandâinsights from gene expression profiling

Amy Paten (3474197)
Elizabeth Duncan (810980)
Sarah Pain (3474200)
Sam Peterson (3474194)
Paul Kenyon (3474206)
Hugh Blair (3474203)
Peter Dearden (65392)

October 2015

RNA-seq data for genes more highly expressed during late pregnancy. Table S3: RNA-seq data for genes...

Additional file 3: of Necrotizing enterocolitis is associated with acute brain responses in preterm pigs

Jing Sun (141206)
Xiaoyu Pan (31050)
Line Christiansen (5360555)
Xiao-Long Yuan (4619179)
Kerstin Skovgaard (429097)
Dereck Chatterton (5360558)
Sanne Kaalund (5360549)
Fei Gao (29262)
Per Sangild (5360552)
Stanislava Pankratova (2423647)

June 2018

Table S2. Differentially expressed genes (DEGs) between Co-NEC and No-NEC groups. Listed are all the...

Additional file 2: of A genome-wide landscape of mRNAs, lncRNAs, and circRNAs during subcutaneous adipogenesis in pigs

Xin Liu (43569)
Kaiqing Liu (3391595)
Baosen Shan (5919614)
Shengjuan Wei (5919617)
Dongfeng Li (192917)
Haiyin Han (5919620)
Wei Wei (21173)
Jie Chen (5892)
Honglin Liu (108352)
Lifan Zhang (391216)

November 2018

List of expressed genes during porcine preadipocyte differentiation. Gene ID, FPKM or SRPBM value, g...

Additional file 3: of Role of AMPK signalling pathway during compensatory growth in pigs

Maria Ballester (103767)
Marcel Amills (168991)
Olga González-Rodríguez (4349749)
Tainã Cardoso (3585575)
Mariam Pascual (5755100)
Rayner González-Prendes (4349755)
Núria Panella-Riera (5755103)
Isabel Díaz (2698609)
Joan Tibau (3779230)
Raquel Quintanilla (168993)

September 2018

Table S3. List of genes differentially expressed (p-value adjusted for multiple testing 2 (i.e. ǀlo...

Additional file 1: of Differentially expressed non-coding RNAs induced by transmissible gastroenteritis virus potentially regulate inflammation and NF-ÎşB pathway in porcine intestinal epithelial cell line

Xuelian Ma (5852510)
Xiaomin Zhao (566041)
Zhichao Zhang (530603)
Jianxiong Guo (4571830)
Lijuan Guan (3740323)
Juejun Li (5852513)
Mi Mi (5852516)
Yong Huang (15745)
Dewen Tong (93139)

October 2018

Table S1. The detailed information of differentially expressed mRNAs. Table S2. The detailed informa...

Additional file 1: of Polymorphism of mitochondrial tRNA genes associated with the number of pigs born alive

Dan Wang (34472)
Chao Ning (1781215)
Hai Xiang (3913597)
Xianrui Zheng (140535)
Minghua Kong (6007763)
Tao Yin (401660)
Jianfeng Liu (122580)
Xingbo Zhao (3913603)

November 2018

Table S1. Detail information of used pigs. Table S2. PCR primers used for amplification of pig mitog...

Additional file 1: Table S1. of Genomic regions associated with host response to porcine reproductive and respiratory syndrome vaccination and co-infection in nursery pigs

Jenelle Dunkelberger (3440393)
Nick SerĂŁo (3552065)
Ziqing Weng (3572444)
Emily Waide (4589698)
Megan Niederwerder (4589704)
Maureen Kerrigan (4589701)
Joan Lunney (3570092)
Raymond Rowland (3587747)
Jack Dekkers (3439892)

November 2017

Number of independent principal components per chromosome required to capture 99.5% of the genetic v...

Additional file 1: of Flutamide-induced alterations in transcriptional profiling of neonatal porcine ovaries

Abstract

Extracted data

Additional file 1: of Flutamide-induced alterations in transcriptional profiling of neonatal porcine ovaries

Abstract

Extracted data

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