Additional file 1: Table S1. of Genomic regions associated with host response to porcine reproductive and respiratory syndrome vaccination and co-infection in nursery pigs

Number of independent principal components per chromosome required to capture 99.5% of the genetic variation. Table S2. Number of GO terms corresponding to lists of SNPs associated with each trait. Table S3. Number of GO terms corresponding to SNP lists associated with the main/interaction effect of SNP. Table S4. Significantly enriched GO terms for genes near SNPs associated with ADG following PRRS vaccination. Table S5. Significantly enriched GO terms for genes near SNPs associated with PRRS VL following PRRSV/PCV2b co-infection. Table S6. Significantly enriched GO terms for genes near SNPs associated with PCV2b VL following PRRSV/PCV2b co-infection. Table S7. Significantly enriched GO terms for genes near SNPs associated with ADG following PRRSV/PCV2b co-infection. Table S8. QTL Test results for SNPs associated with PRRS and PCV2b VL. Table S9. QTL Test results for SNPs associated with ADG following PRRS vaccination and PRRSV/PCV2b co-infection. Table S10. SNP Test results for SNPs associated with PRRS and PCV2b VL. Table S11. SNP Test results for SNPs associated with ADG following PRRS vaccination and PRRSV/PCV2b co-infection. (DOCX 74Â kb