Additional file 9: of Computational enhancer prediction: evaluation and improvements
- Hasiba Asma (6561578)
- Marc Halfon (6561581)
Publication date
April 2019
DOIAbstract
Figure S4. Scaffold length distribution of real vs simulated genome. (PDF 494 kb
Figure S4. Scaffold length distribution of real vs simulated genome. (PDF 494 kb
Table S1. Chunk Distribution Across The Reference Genome (Human Assembly Version GRCh37). File consi...
Table S1. Genomic data sources. Table S2. Summary of 10× Genomics Chromium datasets used for assembl...
This file includes four supporting figures for the paper, Figs. S1-S4, which have been cited corresp...
Table S1. Sizes of expression-pattern annotated CRM groups in REDfly. (XLSX 13 kb
Figure S1. Flow chart of P_RNA_scaffolder. Figure S2. The correlation between corrected N50 size imp...
Table S2. Data for pCRMeval for 29 training sets at a fixed cutoff. Values for training set sensitiv...
Table S3. Data for pCRMeval for 29 training sets on a semi-continuous scale. Values for training set...
Figure S3. Results of SCRMshaw assessment by pCRMeval on a semi-continuous scale. (i) Training set s...
Figure S2. Results of SCRMshaw assessment by pCRMeval using a fixed cutoff. (i) Training set sensiti...
Figure S1. Performance evaluation of SCRMshaw using pCRMeval on a semi-continuous scale. Performance...
Table S5. Data for pCRMeval for 29 training sets with varying offsets on a semi-continuous scale. Va...
Table S4. Data for pCRMeval for 29 training sets with varying offsets at a fixed cutoff. Values for ...
Figure S10. ChIP-seq and DNase-seq data from mES cells can also be used as input. (PDF 136 kb
Tables S1. The SRA accessions of human paired-end RNA-sequencing reads. Table S2. The performance of...
Figure S6. Variation of model parameters does not lead to large changes in the resulting configurati...
Table S1. Chunk Distribution Across The Reference Genome (Human Assembly Version GRCh37). File consi...
Table S1. Genomic data sources. Table S2. Summary of 10× Genomics Chromium datasets used for assembl...
This file includes four supporting figures for the paper, Figs. S1-S4, which have been cited corresp...
Table S1. Sizes of expression-pattern annotated CRM groups in REDfly. (XLSX 13 kb
Figure S1. Flow chart of P_RNA_scaffolder. Figure S2. The correlation between corrected N50 size imp...
Table S2. Data for pCRMeval for 29 training sets at a fixed cutoff. Values for training set sensitiv...
Table S3. Data for pCRMeval for 29 training sets on a semi-continuous scale. Values for training set...
Figure S3. Results of SCRMshaw assessment by pCRMeval on a semi-continuous scale. (i) Training set s...
Figure S2. Results of SCRMshaw assessment by pCRMeval using a fixed cutoff. (i) Training set sensiti...
Figure S1. Performance evaluation of SCRMshaw using pCRMeval on a semi-continuous scale. Performance...
Table S5. Data for pCRMeval for 29 training sets with varying offsets on a semi-continuous scale. Va...
Table S4. Data for pCRMeval for 29 training sets with varying offsets at a fixed cutoff. Values for ...
Figure S10. ChIP-seq and DNase-seq data from mES cells can also be used as input. (PDF 136 kb
Tables S1. The SRA accessions of human paired-end RNA-sequencing reads. Table S2. The performance of...
Figure S6. Variation of model parameters does not lead to large changes in the resulting configurati...
Table S1. Chunk Distribution Across The Reference Genome (Human Assembly Version GRCh37). File consi...
Table S1. Genomic data sources. Table S2. Summary of 10× Genomics Chromium datasets used for assembl...
This file includes four supporting figures for the paper, Figs. S1-S4, which have been cited corresp...
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