Additional file 6: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Additional file 6: of Genome expansion of an obligate parthenogenesis-associated Wolbachia poses an exception to the symbiont reduction model

A. Kampfraath (6309950)
L. Klasson (6309953)
S. Anvar (3548153)
R. Vossen (6309956)
D. Roelofs (754945)
K. Kraaijeveld (754937)
J. Ellers (6309959)

February 2019

Host genome size to Wolbachia genome size excluding RPOs. Correlation between host genome size and W...

The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude
Abhilash Nair
Helena Johansson
Yannick Wurm
Liselotte Sundström

April 2019

Abstract Background Adapting to changes in the environment is the foundation of species survival, an...

Additional file 1: of Prevalence and genetic diversity of Wolbachia endosymbiont and mtDNA in Palearctic populations of Drosophila melanogaster

Roman Bykov (6409112)
Maria Yudina (6409115)
Nataly Gruntenko (6409118)
Ilya Zakharov (5309633)
Marina Voloshina (6409121)
Elena Melashchenko (6409124)
Maria Danilova (6409127)
Ilia Mazunin (3452237)
Yury Ilinsky (104065)

February 2019

List of Drosophila melanogaster stocks used for analysis of 343âbp mtDNA region. GenBank numbers o...

Additional file 12: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Figure S4. Visualization of sequence similarity between chromosomal Wolbachia and cytoplasmic Wolbac...

Additional file 11: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte SundstrĂśm (6594731)

April 2019

Figure S3. Schematic representation of cifA andÂ cifB gene locations on the wFex genome assembly. (P...

Additional file 7: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Table S6. List of genes with paralogs in the wFex genome, which are present as single copies in the ...

Additional file 10: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Figure S2. Venn diagram displaying the overlap in orthologous genes across CI-inducing and mutualist...

Additional file 8: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Table S7. List of conserved Wolbachia genes used for phylogenetic analysis. (XLSX 14 kb

Additional file 1: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Table S1. Comparison of assembly statistics of the F. exsecta genome and 13 other published ant geno...

Additional file 13: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Figure S5. TAGC plot of F. exsecta, and its Wolbachia endosymbiont. The TAGC plots were taxonomicall...

Additional file 9: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Table S8. List of species-specific genes in wFex genome, as identified by OrthoVenn. (XLSX 15 kb

Additional file 2: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Table S2. List of genes specific to the Formicinae as identified by OrthoVenn. (XLSX 20 kb

Additional file 5: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte SundstrĂśm (6594731)

April 2019

Table S5. List of F. exsecta genes showing dN/dS ratios >â1 in pairwise comparison to Camponotus f...

Additional file 3: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Table S3. List of species-specific genes in F. exsecta, as identified by OrthoVenn. (XLSX 24 kb

Additional file 4: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte SundstrĂśm (6594731)

April 2019

Table S4. List of F. exsecta genes under positive or relaxed purifying selection (dN/dS ratios >â1...

Additional file 6: of Genome expansion of an obligate parthenogenesis-associated Wolbachia poses an exception to the symbiont reduction model

A. Kampfraath (6309950)
L. Klasson (6309953)
S. Anvar (3548153)
R. Vossen (6309956)
D. Roelofs (754945)
K. Kraaijeveld (754937)
J. Ellers (6309959)

February 2019

Host genome size to Wolbachia genome size excluding RPOs. Correlation between host genome size and W...

The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude
Abhilash Nair
Helena Johansson
Yannick Wurm
Liselotte Sundström

April 2019

Abstract Background Adapting to changes in the environment is the foundation of species survival, an...

Additional file 1: of Prevalence and genetic diversity of Wolbachia endosymbiont and mtDNA in Palearctic populations of Drosophila melanogaster

Roman Bykov (6409112)
Maria Yudina (6409115)
Nataly Gruntenko (6409118)
Ilya Zakharov (5309633)
Marina Voloshina (6409121)
Elena Melashchenko (6409124)
Maria Danilova (6409127)
Ilia Mazunin (3452237)
Yury Ilinsky (104065)

February 2019

List of Drosophila melanogaster stocks used for analysis of 343âbp mtDNA region. GenBank numbers o...

Additional file 12: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Figure S4. Visualization of sequence similarity between chromosomal Wolbachia and cytoplasmic Wolbac...

Additional file 11: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte SundstrĂśm (6594731)

April 2019

Figure S3. Schematic representation of cifA andÂ cifB gene locations on the wFex genome assembly. (P...

Additional file 7: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Table S6. List of genes with paralogs in the wFex genome, which are present as single copies in the ...

Additional file 10: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Figure S2. Venn diagram displaying the overlap in orthologous genes across CI-inducing and mutualist...

Additional file 8: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Table S7. List of conserved Wolbachia genes used for phylogenetic analysis. (XLSX 14 kb

Additional file 1: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Table S1. Comparison of assembly statistics of the F. exsecta genome and 13 other published ant geno...

Additional file 13: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Figure S5. TAGC plot of F. exsecta, and its Wolbachia endosymbiont. The TAGC plots were taxonomicall...

Additional file 9: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Table S8. List of species-specific genes in wFex genome, as identified by OrthoVenn. (XLSX 15 kb

Additional file 2: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Table S2. List of genes specific to the Formicinae as identified by OrthoVenn. (XLSX 20 kb

Additional file 5: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte SundstrĂśm (6594731)

April 2019

Table S5. List of F. exsecta genes showing dN/dS ratios >â1 in pairwise comparison to Camponotus f...

Additional file 3: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Table S3. List of species-specific genes in F. exsecta, as identified by OrthoVenn. (XLSX 24 kb

Additional file 4: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte SundstrĂśm (6594731)

April 2019

Table S4. List of F. exsecta genes under positive or relaxed purifying selection (dN/dS ratios >â1...

Additional file 6: of Genome expansion of an obligate parthenogenesis-associated Wolbachia poses an exception to the symbiont reduction model

A. Kampfraath (6309950)
L. Klasson (6309953)
S. Anvar (3548153)
R. Vossen (6309956)
D. Roelofs (754945)
K. Kraaijeveld (754937)
J. Ellers (6309959)

February 2019

Host genome size to Wolbachia genome size excluding RPOs. Correlation between host genome size and W...

The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude
Abhilash Nair
Helena Johansson
Yannick Wurm
Liselotte Sundström

April 2019

Abstract Background Adapting to changes in the environment is the foundation of species survival, an...

Additional file 1: of Prevalence and genetic diversity of Wolbachia endosymbiont and mtDNA in Palearctic populations of Drosophila melanogaster

Roman Bykov (6409112)
Maria Yudina (6409115)
Nataly Gruntenko (6409118)
Ilya Zakharov (5309633)
Marina Voloshina (6409121)
Elena Melashchenko (6409124)
Maria Danilova (6409127)
Ilia Mazunin (3452237)
Yury Ilinsky (104065)

February 2019

List of Drosophila melanogaster stocks used for analysis of 343âbp mtDNA region. GenBank numbers o...

Additional file 6: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Abstract

Extracted data

Additional file 6: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Abstract

Extracted data

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