Additional file 4: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude
Abhilash Nair
Helena Johansson
Yannick Wurm
Liselotte Sundström

April 2019

Abstract Background Adapting to changes in the environment is the foundation of species survival, an...

Additional file 2: of Phylogenomic methods outperform traditional multi-locus approaches in resolving deep evolutionary history: a case study of formicine ants

Bonnie Blaimer (3344411)
SeĂĄn Brady (3517679)
Ted Schultz (611143)
Michael Lloyd (2672767)
Brian Fisher (2460859)
Philip Ward (3517676)

December 2015

Genbank accessions for PCR-amplified sequences included in this study. Table including specimen iden...

Transcriptome Characterisation of the Ant Formica exsecta with New Insights into the Evolution of Desaturase Genes in Social Hymenoptera

Khalid Belkhir
Emma Gregson
Juan Galindo
Stephen J. Martin¤b
Roger K. Butlin
Carole M. Smadja

August 2016

Background: Despite the recent sequencing of seven ant genomes, no genomic data are available for th...

Additional file 5: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte SundstrĂśm (6594731)

April 2019

Table S5. List of F. exsecta genes showing dN/dS ratios >â1 in pairwise comparison to Camponotus f...

Additional file 3: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Table S3. List of species-specific genes in F. exsecta, as identified by OrthoVenn. (XLSX 24 kb

Additional file 1: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Table S1. Comparison of assembly statistics of the F. exsecta genome and 13 other published ant geno...

Additional file 8: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Table S7. List of conserved Wolbachia genes used for phylogenetic analysis. (XLSX 14 kb

Additional file 2: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Table S2. List of genes specific to the Formicinae as identified by OrthoVenn. (XLSX 20 kb

Additional file 9: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Table S8. List of species-specific genes in wFex genome, as identified by OrthoVenn. (XLSX 15 kb

Additional file 7: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Table S6. List of genes with paralogs in the wFex genome, which are present as single copies in the ...

Additional file 10: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Figure S2. Venn diagram displaying the overlap in orthologous genes across CI-inducing and mutualist...

Additional file 13: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Figure S5. TAGC plot of F. exsecta, and its Wolbachia endosymbiont. The TAGC plots were taxonomicall...

Additional file 12: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Figure S4. Visualization of sequence similarity between chromosomal Wolbachia and cytoplasmic Wolbac...

Additional file 11: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte SundstrĂśm (6594731)

April 2019

Figure S3. Schematic representation of cifA andÂ cifB gene locations on the wFex genome assembly. (P...

Additional file 6: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Figure S1. Visualization of genome coverage of wFex against the Wolbachia endosymbiont of Drosophila...

The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude
Abhilash Nair
Helena Johansson
Yannick Wurm
Liselotte Sundström

April 2019

Abstract Background Adapting to changes in the environment is the foundation of species survival, an...

Additional file 2: of Phylogenomic methods outperform traditional multi-locus approaches in resolving deep evolutionary history: a case study of formicine ants

Bonnie Blaimer (3344411)
SeĂĄn Brady (3517679)
Ted Schultz (611143)
Michael Lloyd (2672767)
Brian Fisher (2460859)
Philip Ward (3517676)

December 2015

Genbank accessions for PCR-amplified sequences included in this study. Table including specimen iden...

Transcriptome Characterisation of the Ant Formica exsecta with New Insights into the Evolution of Desaturase Genes in Social Hymenoptera

Khalid Belkhir
Emma Gregson
Juan Galindo
Stephen J. Martin¤b
Roger K. Butlin
Carole M. Smadja

August 2016

Background: Despite the recent sequencing of seven ant genomes, no genomic data are available for th...

Additional file 5: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte SundstrĂśm (6594731)

April 2019

Table S5. List of F. exsecta genes showing dN/dS ratios >â1 in pairwise comparison to Camponotus f...

Additional file 3: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Table S3. List of species-specific genes in F. exsecta, as identified by OrthoVenn. (XLSX 24 kb

Additional file 1: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Table S1. Comparison of assembly statistics of the F. exsecta genome and 13 other published ant geno...

Additional file 8: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Table S7. List of conserved Wolbachia genes used for phylogenetic analysis. (XLSX 14 kb

Additional file 2: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Table S2. List of genes specific to the Formicinae as identified by OrthoVenn. (XLSX 20 kb

Additional file 9: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Table S8. List of species-specific genes in wFex genome, as identified by OrthoVenn. (XLSX 15 kb

Additional file 7: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Table S6. List of genes with paralogs in the wFex genome, which are present as single copies in the ...

Additional file 10: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Figure S2. Venn diagram displaying the overlap in orthologous genes across CI-inducing and mutualist...

Additional file 13: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Figure S5. TAGC plot of F. exsecta, and its Wolbachia endosymbiont. The TAGC plots were taxonomicall...

Additional file 12: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Figure S4. Visualization of sequence similarity between chromosomal Wolbachia and cytoplasmic Wolbac...

Additional file 11: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte SundstrĂśm (6594731)

April 2019

Figure S3. Schematic representation of cifA andÂ cifB gene locations on the wFex genome assembly. (P...

Additional file 6: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude (402088)
Abhilash Nair (689200)
Helena Johansson (238878)
Yannick Wurm (120637)
Liselotte Sundstrรถm (6594746)

April 2019

Figure S1. Visualization of genome coverage of wFex against the Wolbachia endosymbiont of Drosophila...

The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Kishor Dhaygude
Abhilash Nair
Helena Johansson
Yannick Wurm
Liselotte Sundström

April 2019

Abstract Background Adapting to changes in the environment is the foundation of species survival, an...

Additional file 2: of Phylogenomic methods outperform traditional multi-locus approaches in resolving deep evolutionary history: a case study of formicine ants

Bonnie Blaimer (3344411)
SeĂĄn Brady (3517679)
Ted Schultz (611143)
Michael Lloyd (2672767)
Brian Fisher (2460859)
Philip Ward (3517676)

December 2015

Genbank accessions for PCR-amplified sequences included in this study. Table including specimen iden...

Transcriptome Characterisation of the Ant Formica exsecta with New Insights into the Evolution of Desaturase Genes in Social Hymenoptera

Khalid Belkhir
Emma Gregson
Juan Galindo
Stephen J. Martin¤b
Roger K. Butlin
Carole M. Smadja

August 2016

Background: Despite the recent sequencing of seven ant genomes, no genomic data are available for th...

Additional file 4: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Abstract

Extracted data

Additional file 4: of The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

Abstract

Extracted data

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