Additional file 7: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Genome Sequencing of Multiple Isolates Highlights Subtelomeric Genomic Diversity within Fusarium fujikuroi

Chiara, Matteo
Fanelli, Francesca
Mulè, Giuseppina
Logrieco, Antonio F
PESOLE, Graziano
Leslie, John F
Horner, David S
Toomajian, Christopher

January 2015

Comparisons of draft genome sequences of three geographically distinct isolates of Fusarium fujikuro...

Additional file 8: of Inter-genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum

Robert King (2499592)
Neil Brown (2170558)
Martin Urban (13910)
Kim Hammond-Kosack (759901)

April 2018

Comparative statistics on the number of coding and non-coding gene models predicted in the Fusarium ...

Birth, death and horizontal transfer of the fumonisin biosynthetic gene cluster during the evolutionary diversification of fusarium

Proctor, R.H.
Van Hove, François
Susca, A.
Stea, G.
Busman, M.
van der Lee, T.
Waalwijk, C.
Moretti, A.
Ward, T.J.

January 2013

Summary: Fumonisins are a family of carcinogenic secondary metabolites produced by members of the Fu...

Additional file 1: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Alessandra Villani (6627608)
Robert Proctor (6627611)
Hye-Seon Kim (5095523)
Daren Brown (6627614)
Antonio Logrieco (3061605)
Maria Amatulli (6627617)
Antonio Moretti (5885123)
Antonia Susca (3747580)

April 2019

List of 30 HK genes and strains used to infer species trees in this study. (DOCX 16 kb

Additional file 6: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Alessandra Villani (6627608)
Robert Proctor (6627611)
Hye-Seon Kim (5095523)
Daren Brown (6627614)
Antonio Logrieco (3061605)
Maria Amatulli (6627617)
Antonio Moretti (5885123)
Antonia Susca (3747580)

April 2019

Reconciled NRPS and PKS trees with duplication, losses and HGT events as obtained from NOTUNG. Dupli...

Additional file 5: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Alessandra Villani (6627608)
Robert Proctor (6627611)
Hye-Seon Kim (5095523)
Daren Brown (6627614)
Antonio Logrieco (3061605)
Maria Amatulli (6627617)
Antonio Moretti (5885123)
Antonia Susca (3747580)

April 2019

Trees inferred by ML analysis of individual NRPS and PKS genes retrieved from FIESC genome sequences...

Additional file 3: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Alessandra Villani (6627608)
Robert Proctor (6627611)
Hye-Seon Kim (5095523)
Daren Brown (6627614)
Antonio Logrieco (3061605)
Maria Amatulli (6627617)
Antonio Moretti (5885123)
Antonia Susca (3747580)

April 2019

Results of BLASTn analysis to assess presence and absence of genes or gene clusters for which the se...

Additional file 2: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Alessandra Villani (6627608)
Robert Proctor (6627611)
Hye-Seon Kim (5095523)
Daren Brown (6627614)
Antonio Logrieco (3061605)
Maria Amatulli (6627617)
Antonio Moretti (5885123)
Antonia Susca (3747580)

April 2019

Fusarium species tree inferred by maximum likelihood analysis of concatenated sequences of 30 housek...

Additional file 9: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Alessandra Villani (6627608)
Robert Proctor (6627611)
Hye-Seon Kim (5095523)
Daren Brown (6627614)
Antonio Logrieco (3061605)
Maria Amatulli (6627617)
Antonio Moretti (5885123)
Antonia Susca (3747580)

April 2019

A. Analysis of homologs of the putative PKS42-NRPS34 cluster. On the left, tree inferred by maximum ...

Additional file 4: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Alessandra Villani (6627608)
Robert Proctor (6627611)
Hye-Seon Kim (5095523)
Daren Brown (6627614)
Antonio Logrieco (3061605)
Maria Amatulli (6627617)
Antonio Moretti (5885123)
Antonia Susca (3747580)

April 2019

Trees inferred by maximum likelihood analysis of alignment of predicted amino acid sequences of the ...

Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Alessandra Villani
Robert H. Proctor
Hye-Seon Kim
Daren W. Brown
Antonio F. Logrieco
Maria Teresa Amatulli
Antonio Moretti
Antonia Susca

April 2019

Abstract Background The Fusarium incarnatum-equiseti species complex (FIESC) comprises 33 phylogenet...

Additional file 2: of Whole genome sequencing and comparative genomics of closely related Fusarium Head Blight fungi: Fusarium graminearum, F. meridionale and F. asiaticum

Sean Walkowiak (203653)
Owen Rowland (1348)
Nicolas Rodrigue (21473)
Rajagopal Subramaniam (203664)

December 2016

Summary tables for gene conservation, variation, annotation, and functional enrichment analyses. Des...

Additional file 16: of Inter-genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum

Robert King (2499592)
Neil Brown (2170558)
Martin Urban (13910)
Kim Hammond-Kosack (759901)

April 2018

A summary of secondary metabolite clusters (SMCs) found in Fusarium venenatum and F. graminearum. Us...

Genome Sequencing of Multiple Isolates Highlights Subtelomeric Genomic Diversity within Fusarium fujikuroi

Chiara, Matteo
Fanelli, Francesca
Mulè, Giuseppina
Logrieco, Antonio F
PESOLE, Graziano
Leslie, John F
Horner, David S
Toomajian, Christopher

January 2015

Comparisons of draft genome sequences of three geographically distinct isolates of Fusarium fujikuro...

The number of identified signature genes for secondary metabolism in the three F. avenaceum strains compared to the other public Fusarium genome sequences.

Erik Lysøe (698003)
Linda J. Harris (203661)
Sean Walkowiak (203653)
Rajagopal Subramaniam (203664)
Hege H. Divon (698004)
Even S. Riiser (698005)
Carlos Llorens (698006)
Toni Gabaldón (22831)
H. Corby Kistler (160949)
Wilfried Jonkers (160931)
Anna-Karin Kolseth (698007)
Kristian F. Nielsen (142498)
Ulf Thrane (210026)
Rasmus J. N. Frandsen (698008)

November 2014

The number of genes that are unique for F. avenaceum is given in the parentheses. Gene cla...

Genome Sequencing of Multiple Isolates Highlights Subtelomeric Genomic Diversity within Fusarium fujikuroi

Chiara, Matteo
Fanelli, Francesca
Mulè, Giuseppina
Logrieco, Antonio F
PESOLE, Graziano
Leslie, John F
Horner, David S
Toomajian, Christopher

January 2015

Comparisons of draft genome sequences of three geographically distinct isolates of Fusarium fujikuro...

Additional file 8: of Inter-genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum

Robert King (2499592)
Neil Brown (2170558)
Martin Urban (13910)
Kim Hammond-Kosack (759901)

April 2018

Comparative statistics on the number of coding and non-coding gene models predicted in the Fusarium ...

Birth, death and horizontal transfer of the fumonisin biosynthetic gene cluster during the evolutionary diversification of fusarium

Proctor, R.H.
Van Hove, François
Susca, A.
Stea, G.
Busman, M.
van der Lee, T.
Waalwijk, C.
Moretti, A.
Ward, T.J.

January 2013

Summary: Fumonisins are a family of carcinogenic secondary metabolites produced by members of the Fu...

Additional file 1: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Alessandra Villani (6627608)
Robert Proctor (6627611)
Hye-Seon Kim (5095523)
Daren Brown (6627614)
Antonio Logrieco (3061605)
Maria Amatulli (6627617)
Antonio Moretti (5885123)
Antonia Susca (3747580)

April 2019

List of 30 HK genes and strains used to infer species trees in this study. (DOCX 16 kb

Additional file 6: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Alessandra Villani (6627608)
Robert Proctor (6627611)
Hye-Seon Kim (5095523)
Daren Brown (6627614)
Antonio Logrieco (3061605)
Maria Amatulli (6627617)
Antonio Moretti (5885123)
Antonia Susca (3747580)

April 2019

Reconciled NRPS and PKS trees with duplication, losses and HGT events as obtained from NOTUNG. Dupli...

Additional file 5: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Alessandra Villani (6627608)
Robert Proctor (6627611)
Hye-Seon Kim (5095523)
Daren Brown (6627614)
Antonio Logrieco (3061605)
Maria Amatulli (6627617)
Antonio Moretti (5885123)
Antonia Susca (3747580)

April 2019

Trees inferred by ML analysis of individual NRPS and PKS genes retrieved from FIESC genome sequences...

Additional file 3: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Alessandra Villani (6627608)
Robert Proctor (6627611)
Hye-Seon Kim (5095523)
Daren Brown (6627614)
Antonio Logrieco (3061605)
Maria Amatulli (6627617)
Antonio Moretti (5885123)
Antonia Susca (3747580)

April 2019

Results of BLASTn analysis to assess presence and absence of genes or gene clusters for which the se...

Additional file 2: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Alessandra Villani (6627608)
Robert Proctor (6627611)
Hye-Seon Kim (5095523)
Daren Brown (6627614)
Antonio Logrieco (3061605)
Maria Amatulli (6627617)
Antonio Moretti (5885123)
Antonia Susca (3747580)

April 2019

Fusarium species tree inferred by maximum likelihood analysis of concatenated sequences of 30 housek...

Additional file 9: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Alessandra Villani (6627608)
Robert Proctor (6627611)
Hye-Seon Kim (5095523)
Daren Brown (6627614)
Antonio Logrieco (3061605)
Maria Amatulli (6627617)
Antonio Moretti (5885123)
Antonia Susca (3747580)

April 2019

A. Analysis of homologs of the putative PKS42-NRPS34 cluster. On the left, tree inferred by maximum ...

Additional file 4: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Alessandra Villani (6627608)
Robert Proctor (6627611)
Hye-Seon Kim (5095523)
Daren Brown (6627614)
Antonio Logrieco (3061605)
Maria Amatulli (6627617)
Antonio Moretti (5885123)
Antonia Susca (3747580)

April 2019

Trees inferred by maximum likelihood analysis of alignment of predicted amino acid sequences of the ...

Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Alessandra Villani
Robert H. Proctor
Hye-Seon Kim
Daren W. Brown
Antonio F. Logrieco
Maria Teresa Amatulli
Antonio Moretti
Antonia Susca

April 2019

Abstract Background The Fusarium incarnatum-equiseti species complex (FIESC) comprises 33 phylogenet...

Additional file 2: of Whole genome sequencing and comparative genomics of closely related Fusarium Head Blight fungi: Fusarium graminearum, F. meridionale and F. asiaticum

Sean Walkowiak (203653)
Owen Rowland (1348)
Nicolas Rodrigue (21473)
Rajagopal Subramaniam (203664)

December 2016

Summary tables for gene conservation, variation, annotation, and functional enrichment analyses. Des...

Additional file 16: of Inter-genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum

Robert King (2499592)
Neil Brown (2170558)
Martin Urban (13910)
Kim Hammond-Kosack (759901)

April 2018

A summary of secondary metabolite clusters (SMCs) found in Fusarium venenatum and F. graminearum. Us...

Genome Sequencing of Multiple Isolates Highlights Subtelomeric Genomic Diversity within Fusarium fujikuroi

Chiara, Matteo
Fanelli, Francesca
Mulè, Giuseppina
Logrieco, Antonio F
PESOLE, Graziano
Leslie, John F
Horner, David S
Toomajian, Christopher

January 2015

Comparisons of draft genome sequences of three geographically distinct isolates of Fusarium fujikuro...

The number of identified signature genes for secondary metabolism in the three F. avenaceum strains compared to the other public Fusarium genome sequences.

Erik Lysøe (698003)
Linda J. Harris (203661)
Sean Walkowiak (203653)
Rajagopal Subramaniam (203664)
Hege H. Divon (698004)
Even S. Riiser (698005)
Carlos Llorens (698006)
Toni Gabaldón (22831)
H. Corby Kistler (160949)
Wilfried Jonkers (160931)
Anna-Karin Kolseth (698007)
Kristian F. Nielsen (142498)
Ulf Thrane (210026)
Rasmus J. N. Frandsen (698008)

November 2014

The number of genes that are unique for F. avenaceum is given in the parentheses. Gene cla...

Genome Sequencing of Multiple Isolates Highlights Subtelomeric Genomic Diversity within Fusarium fujikuroi

Chiara, Matteo
Fanelli, Francesca
Mulè, Giuseppina
Logrieco, Antonio F
PESOLE, Graziano
Leslie, John F
Horner, David S
Toomajian, Christopher

January 2015

Comparisons of draft genome sequences of three geographically distinct isolates of Fusarium fujikuro...

Additional file 8: of Inter-genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum

Robert King (2499592)
Neil Brown (2170558)
Martin Urban (13910)
Kim Hammond-Kosack (759901)

April 2018

Comparative statistics on the number of coding and non-coding gene models predicted in the Fusarium ...

Birth, death and horizontal transfer of the fumonisin biosynthetic gene cluster during the evolutionary diversification of fusarium

Proctor, R.H.
Van Hove, François
Susca, A.
Stea, G.
Busman, M.
van der Lee, T.
Waalwijk, C.
Moretti, A.
Ward, T.J.

January 2013

Summary: Fumonisins are a family of carcinogenic secondary metabolites produced by members of the Fu...

Additional file 7: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Abstract

Extracted data

Additional file 7: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Abstract

Extracted data

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