Additional file 6: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

The number of identified signature genes for secondary metabolism in the three F. avenaceum strains compared to the other public Fusarium genome sequences.

Erik Lysøe (698003)
Linda J. Harris (203661)
Sean Walkowiak (203653)
Rajagopal Subramaniam (203664)
Hege H. Divon (698004)
Even S. Riiser (698005)
Carlos Llorens (698006)
Toni Gabaldón (22831)
H. Corby Kistler (160949)
Wilfried Jonkers (160931)
Anna-Karin Kolseth (698007)
Kristian F. Nielsen (142498)
Ulf Thrane (210026)
Rasmus J. N. Frandsen (698008)

November 2014

The number of genes that are unique for F. avenaceum is given in the parentheses. Gene cla...

Additional file 10: of Inter-genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum

Robert King (2499592)
Neil Brown (2170558)
Martin Urban (13910)
Kim Hammond-Kosack (759901)

April 2018

Classes of transposon and repeat found in Fusarium graminearum and Fusarium venenatum. (XLS 37Â kb

Additional file 3: of Whole genome sequencing and comparative genomics of closely related Fusarium Head Blight fungi: Fusarium graminearum, F. meridionale and F. asiaticum

Sean Walkowiak (203653)
Owen Rowland (1348)
Nicolas Rodrigue (21473)
Rajagopal Subramaniam (203664)

December 2016

Percent gene overlap between genomes. Description: The percentage of genes from the query genome in ...

Additional file 7: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Alessandra Villani (6627608)
Robert Proctor (6627611)
Hye-Seon Kim (5095523)
Daren Brown (6627614)
Antonio Logrieco (3061605)
Maria Amatulli (6627617)
Antonio Moretti (5885123)
Antonia Susca (3747580)

April 2019

Results of Shimodaira-Hasegawa (SH) and Approximately Unbiassed (AU) tests used to assess branches t...

Additional file 1: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Alessandra Villani (6627608)
Robert Proctor (6627611)
Hye-Seon Kim (5095523)
Daren Brown (6627614)
Antonio Logrieco (3061605)
Maria Amatulli (6627617)
Antonio Moretti (5885123)
Antonia Susca (3747580)

April 2019

List of 30 HK genes and strains used to infer species trees in this study. (DOCX 16 kb

Additional file 5: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Alessandra Villani (6627608)
Robert Proctor (6627611)
Hye-Seon Kim (5095523)
Daren Brown (6627614)
Antonio Logrieco (3061605)
Maria Amatulli (6627617)
Antonio Moretti (5885123)
Antonia Susca (3747580)

April 2019

Trees inferred by ML analysis of individual NRPS and PKS genes retrieved from FIESC genome sequences...

Additional file 2: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Alessandra Villani (6627608)
Robert Proctor (6627611)
Hye-Seon Kim (5095523)
Daren Brown (6627614)
Antonio Logrieco (3061605)
Maria Amatulli (6627617)
Antonio Moretti (5885123)
Antonia Susca (3747580)

April 2019

Fusarium species tree inferred by maximum likelihood analysis of concatenated sequences of 30 housek...

Additional file 3: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Alessandra Villani (6627608)
Robert Proctor (6627611)
Hye-Seon Kim (5095523)
Daren Brown (6627614)
Antonio Logrieco (3061605)
Maria Amatulli (6627617)
Antonio Moretti (5885123)
Antonia Susca (3747580)

April 2019

Results of BLASTn analysis to assess presence and absence of genes or gene clusters for which the se...

Additional file 9: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Alessandra Villani (6627608)
Robert Proctor (6627611)
Hye-Seon Kim (5095523)
Daren Brown (6627614)
Antonio Logrieco (3061605)
Maria Amatulli (6627617)
Antonio Moretti (5885123)
Antonia Susca (3747580)

April 2019

A. Analysis of homologs of the putative PKS42-NRPS34 cluster. On the left, tree inferred by maximum ...

Additional file 4: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Alessandra Villani (6627608)
Robert Proctor (6627611)
Hye-Seon Kim (5095523)
Daren Brown (6627614)
Antonio Logrieco (3061605)
Maria Amatulli (6627617)
Antonio Moretti (5885123)
Antonia Susca (3747580)

April 2019

Trees inferred by maximum likelihood analysis of alignment of predicted amino acid sequences of the ...

Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Alessandra Villani
Robert H. Proctor
Hye-Seon Kim
Daren W. Brown
Antonio F. Logrieco
Maria Teresa Amatulli
Antonio Moretti
Antonia Susca

April 2019

Abstract Background The Fusarium incarnatum-equiseti species complex (FIESC) comprises 33 phylogenet...

Additional file 2: of Whole genome sequencing and comparative genomics of closely related Fusarium Head Blight fungi: Fusarium graminearum, F. meridionale and F. asiaticum

Sean Walkowiak (203653)
Owen Rowland (1348)
Nicolas Rodrigue (21473)
Rajagopal Subramaniam (203664)

December 2016

Summary tables for gene conservation, variation, annotation, and functional enrichment analyses. Des...

Additional file 16: of Inter-genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum

Robert King (2499592)
Neil Brown (2170558)
Martin Urban (13910)
Kim Hammond-Kosack (759901)

April 2018

A summary of secondary metabolite clusters (SMCs) found in Fusarium venenatum and F. graminearum. Us...

Additional file 15: of Inter-genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum

Robert King (2499592)
Neil Brown (2170558)
Martin Urban (13910)
Kim Hammond-Kosack (759901)

April 2018

Paralogue protein groups in Fusarium venenatum. Some groups show adjacent (neighbour) groupings repr...

Additional file 5: of Inter-genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum

Robert King (2499592)
Neil Brown (2170558)
Martin Urban (13910)
Kim Hammond-Kosack (759901)

April 2018

Comparative genomic analysis of the Fusarium venenatum genome with other fungi. This reveals close s...

The number of identified signature genes for secondary metabolism in the three F. avenaceum strains compared to the other public Fusarium genome sequences.

Erik Lysøe (698003)
Linda J. Harris (203661)
Sean Walkowiak (203653)
Rajagopal Subramaniam (203664)
Hege H. Divon (698004)
Even S. Riiser (698005)
Carlos Llorens (698006)
Toni Gabaldón (22831)
H. Corby Kistler (160949)
Wilfried Jonkers (160931)
Anna-Karin Kolseth (698007)
Kristian F. Nielsen (142498)
Ulf Thrane (210026)
Rasmus J. N. Frandsen (698008)

November 2014

The number of genes that are unique for F. avenaceum is given in the parentheses. Gene cla...

Additional file 10: of Inter-genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum

Robert King (2499592)
Neil Brown (2170558)
Martin Urban (13910)
Kim Hammond-Kosack (759901)

April 2018

Classes of transposon and repeat found in Fusarium graminearum and Fusarium venenatum. (XLS 37Â kb

Additional file 3: of Whole genome sequencing and comparative genomics of closely related Fusarium Head Blight fungi: Fusarium graminearum, F. meridionale and F. asiaticum

Sean Walkowiak (203653)
Owen Rowland (1348)
Nicolas Rodrigue (21473)
Rajagopal Subramaniam (203664)

December 2016

Percent gene overlap between genomes. Description: The percentage of genes from the query genome in ...

Additional file 7: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Alessandra Villani (6627608)
Robert Proctor (6627611)
Hye-Seon Kim (5095523)
Daren Brown (6627614)
Antonio Logrieco (3061605)
Maria Amatulli (6627617)
Antonio Moretti (5885123)
Antonia Susca (3747580)

April 2019

Results of Shimodaira-Hasegawa (SH) and Approximately Unbiassed (AU) tests used to assess branches t...

Additional file 1: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Alessandra Villani (6627608)
Robert Proctor (6627611)
Hye-Seon Kim (5095523)
Daren Brown (6627614)
Antonio Logrieco (3061605)
Maria Amatulli (6627617)
Antonio Moretti (5885123)
Antonia Susca (3747580)

April 2019

List of 30 HK genes and strains used to infer species trees in this study. (DOCX 16 kb

Additional file 5: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Alessandra Villani (6627608)
Robert Proctor (6627611)
Hye-Seon Kim (5095523)
Daren Brown (6627614)
Antonio Logrieco (3061605)
Maria Amatulli (6627617)
Antonio Moretti (5885123)
Antonia Susca (3747580)

April 2019

Trees inferred by ML analysis of individual NRPS and PKS genes retrieved from FIESC genome sequences...

Additional file 2: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Alessandra Villani (6627608)
Robert Proctor (6627611)
Hye-Seon Kim (5095523)
Daren Brown (6627614)
Antonio Logrieco (3061605)
Maria Amatulli (6627617)
Antonio Moretti (5885123)
Antonia Susca (3747580)

April 2019

Fusarium species tree inferred by maximum likelihood analysis of concatenated sequences of 30 housek...

Additional file 3: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Alessandra Villani (6627608)
Robert Proctor (6627611)
Hye-Seon Kim (5095523)
Daren Brown (6627614)
Antonio Logrieco (3061605)
Maria Amatulli (6627617)
Antonio Moretti (5885123)
Antonia Susca (3747580)

April 2019

Results of BLASTn analysis to assess presence and absence of genes or gene clusters for which the se...

Additional file 9: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Alessandra Villani (6627608)
Robert Proctor (6627611)
Hye-Seon Kim (5095523)
Daren Brown (6627614)
Antonio Logrieco (3061605)
Maria Amatulli (6627617)
Antonio Moretti (5885123)
Antonia Susca (3747580)

April 2019

A. Analysis of homologs of the putative PKS42-NRPS34 cluster. On the left, tree inferred by maximum ...

Additional file 4: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Alessandra Villani (6627608)
Robert Proctor (6627611)
Hye-Seon Kim (5095523)
Daren Brown (6627614)
Antonio Logrieco (3061605)
Maria Amatulli (6627617)
Antonio Moretti (5885123)
Antonia Susca (3747580)

April 2019

Trees inferred by maximum likelihood analysis of alignment of predicted amino acid sequences of the ...

Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Alessandra Villani
Robert H. Proctor
Hye-Seon Kim
Daren W. Brown
Antonio F. Logrieco
Maria Teresa Amatulli
Antonio Moretti
Antonia Susca

April 2019

Abstract Background The Fusarium incarnatum-equiseti species complex (FIESC) comprises 33 phylogenet...

Additional file 2: of Whole genome sequencing and comparative genomics of closely related Fusarium Head Blight fungi: Fusarium graminearum, F. meridionale and F. asiaticum

Sean Walkowiak (203653)
Owen Rowland (1348)
Nicolas Rodrigue (21473)
Rajagopal Subramaniam (203664)

December 2016

Summary tables for gene conservation, variation, annotation, and functional enrichment analyses. Des...

Additional file 16: of Inter-genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum

Robert King (2499592)
Neil Brown (2170558)
Martin Urban (13910)
Kim Hammond-Kosack (759901)

April 2018

A summary of secondary metabolite clusters (SMCs) found in Fusarium venenatum and F. graminearum. Us...

Additional file 15: of Inter-genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum

Robert King (2499592)
Neil Brown (2170558)
Martin Urban (13910)
Kim Hammond-Kosack (759901)

April 2018

Paralogue protein groups in Fusarium venenatum. Some groups show adjacent (neighbour) groupings repr...

Additional file 5: of Inter-genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum

Robert King (2499592)
Neil Brown (2170558)
Martin Urban (13910)
Kim Hammond-Kosack (759901)

April 2018

Comparative genomic analysis of the Fusarium venenatum genome with other fungi. This reveals close s...

The number of identified signature genes for secondary metabolism in the three F. avenaceum strains compared to the other public Fusarium genome sequences.

Erik Lysøe (698003)
Linda J. Harris (203661)
Sean Walkowiak (203653)
Rajagopal Subramaniam (203664)
Hege H. Divon (698004)
Even S. Riiser (698005)
Carlos Llorens (698006)
Toni Gabaldón (22831)
H. Corby Kistler (160949)
Wilfried Jonkers (160931)
Anna-Karin Kolseth (698007)
Kristian F. Nielsen (142498)
Ulf Thrane (210026)
Rasmus J. N. Frandsen (698008)

November 2014

The number of genes that are unique for F. avenaceum is given in the parentheses. Gene cla...

Additional file 10: of Inter-genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum

Robert King (2499592)
Neil Brown (2170558)
Martin Urban (13910)
Kim Hammond-Kosack (759901)

April 2018

Classes of transposon and repeat found in Fusarium graminearum and Fusarium venenatum. (XLS 37Â kb

Additional file 3: of Whole genome sequencing and comparative genomics of closely related Fusarium Head Blight fungi: Fusarium graminearum, F. meridionale and F. asiaticum

Sean Walkowiak (203653)
Owen Rowland (1348)
Nicolas Rodrigue (21473)
Rajagopal Subramaniam (203664)

December 2016

Percent gene overlap between genomes. Description: The percentage of genes from the query genome in ...

Additional file 6: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Abstract

Extracted data

Additional file 6: of Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Abstract

Extracted data

Related items

Related items