Explanation of the SnpEff categories for all annotated variants. The number of variants for each type of predicted impact on the gene and the explanation of the effects are shown, as reported in the SnpEff manual ( http://snpeff.sourceforge.net/SnpEff_manual.html ). (XLSX 10 kb
Description of Picea abies SNPs successfully genotyped with the Infinium SNP array. (XLSX 1081 kb
Figure S1. |Δ(SNP-index)| graph derived from the modified QTL-seq analysis of mapping for the red sk...
Figure S1. Diagram of SNP filtering process. Figure S2. Frequency of SNP substitution types. Figure ...
Polymorphism discovery panel. The 55 Pyrus accessions re-sequenced for variant discovery. For each s...
List of trios used for Mendelian check. A total of 22 trios (two parents, P01 and P02, and one offsp...
Statistics about the parental genetic maps of the F1 population P16.009. The number of markers, the ...
Parental genetic maps of the F1 population P16.009 constructed with the Axiom™ Pear 70 K Genotyping ...
Number of samples for each species in the screening panel and in the USDA-NCGR collection. The numbe...
Cluster plots of an ABvarianceY and an OffTargetVariant SNP of the Axiom™ Pear 700 K Genotyping Arra...
Distribution of the SNPs of the Axiom™ 70 K Pear Genotyping Array on the pear genomes. The number of...
Concordance Check results for the samples of the screening panel. Pairwise concordance values 97% ar...
Cluster plots of two OTV SNPs of the Axiom™ Pear 700 K Genotyping Array with samples colored by spec...
Comparison of SNP array and GBS data error rate. The total number of Axiom™ 70 K Pear Genotyping Arr...
Principal Component Analysis (PCA) plots of the PC pairs for the first four PCs. (A) PCA performed w...
Screening panel. The 288 Pyrus accessions screened with the Axiom™ 700 K Pear Genotyping Array. For ...
Description of Picea abies SNPs successfully genotyped with the Infinium SNP array. (XLSX 1081 kb
Figure S1. |Δ(SNP-index)| graph derived from the modified QTL-seq analysis of mapping for the red sk...
Figure S1. Diagram of SNP filtering process. Figure S2. Frequency of SNP substitution types. Figure ...
Polymorphism discovery panel. The 55 Pyrus accessions re-sequenced for variant discovery. For each s...
List of trios used for Mendelian check. A total of 22 trios (two parents, P01 and P02, and one offsp...
Statistics about the parental genetic maps of the F1 population P16.009. The number of markers, the ...
Parental genetic maps of the F1 population P16.009 constructed with the Axiom™ Pear 70 K Genotyping ...
Number of samples for each species in the screening panel and in the USDA-NCGR collection. The numbe...
Cluster plots of an ABvarianceY and an OffTargetVariant SNP of the Axiom™ Pear 700 K Genotyping Arra...
Distribution of the SNPs of the Axiom™ 70 K Pear Genotyping Array on the pear genomes. The number of...
Concordance Check results for the samples of the screening panel. Pairwise concordance values 97% ar...
Cluster plots of two OTV SNPs of the Axiom™ Pear 700 K Genotyping Array with samples colored by spec...
Comparison of SNP array and GBS data error rate. The total number of Axiom™ 70 K Pear Genotyping Arr...
Principal Component Analysis (PCA) plots of the PC pairs for the first four PCs. (A) PCA performed w...
Screening panel. The 288 Pyrus accessions screened with the Axiom™ 700 K Pear Genotyping Array. For ...
Description of Picea abies SNPs successfully genotyped with the Infinium SNP array. (XLSX 1081 kb
Figure S1. |Δ(SNP-index)| graph derived from the modified QTL-seq analysis of mapping for the red sk...
Figure S1. Diagram of SNP filtering process. Figure S2. Frequency of SNP substitution types. Figure ...