Additional file 7: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Additional file 1: of A novel Rice QTL qOPW11 Associated with Panicle Weight Affects Panicle and Plant Architecture

Satoshi Okada (385549)
Megumi Sasaki (169762)
Masanori Yamasaki (755934)

September 2018

Figure S1. The histograms (A and B) and boxplot (C) for OPW of RILs from Koshihikari/Yamadanishiki i...

Additional file 2: of Rapid and pervasive development- and tissue-specific homeolog expression partitioning in newly formed inter-subspecific rice segmental allotetraploids

Long Zhao (408020)
Lei Han (150108)
Chaoxia Xiao (5874725)
Xiuyun Lin (136096)
Chunming Xu (136095)
Chunwu Yang (162843)

October 2018

Figure S1. Mean percentage of tissues showing tissue-specific silencing (TSS) of alleles/homeologs i...

Additional file 7: of Multiple areas investigation reveals the genes related to vascular bundles in rice

Cheng Fei (6496997)
Xin Geng (571200)
Zhengjin Xu (4783467)
Quan Xu (554774)

March 2019

Figure S2. Expression patterns of DEGs. (a) Hierarchical clustering of DEGs. (b) GO analysis of the ...

Additional file 2: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Qigui Jiang (6704969)
Yindi Zeng (6704972)
Baiyang Yu (6704975)
Weijian Cen (5621723)
Siyuan Lu (239565)
Peilong Jia (4796070)
Xuan Wang (55634)
Baoxiang Qin (2156653)
Zhongquan Cai (6704978)
Jijing Luo (217419)

May 2019

Figure S2. Comparison of the plant architecture of S142, 430, and pds at the vegetative stage. (A) M...

Additional file 8: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Qigui Jiang (6704969)
Yindi Zeng (6704972)
Baiyang Yu (6704975)
Weijian Cen (5621723)
Siyuan Lu (239565)
Peilong Jia (4796070)
Xuan Wang (55634)
Baoxiang Qin (2156653)
Zhongquan Cai (6704978)
Jijing Luo (217419)

May 2019

Figure S8. The expression pattern analysis of pds1 candidate genes and spikelet development related ...

Additional file 1: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Qigui Jiang (6704969)
Yindi Zeng (6704972)
Baiyang Yu (6704975)
Weijian Cen (5621723)
Siyuan Lu (239565)
Peilong Jia (4796070)
Xuan Wang (55634)
Baoxiang Qin (2156653)
Zhongquan Cai (6704978)
Jijing Luo (217419)

May 2019

Figure S1. Schematic representation of rice plant, panicle architecture, and spikelet development. (...

Additional file 9: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Qigui Jiang (6704969)
Yindi Zeng (6704972)
Baiyang Yu (6704975)
Weijian Cen (5621723)
Siyuan Lu (239565)
Peilong Jia (4796070)
Xuan Wang (55634)
Baoxiang Qin (2156653)
Zhongquan Cai (6704978)
Jijing Luo (217419)

May 2019

Table S1. The primer sequences of related genes using for qPCR. Table S2. The descriptive statistica...

Additional file 6: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Qigui Jiang (6704969)
Yindi Zeng (6704972)
Baiyang Yu (6704975)
Weijian Cen (5621723)
Siyuan Lu (239565)
Peilong Jia (4796070)
Xuan Wang (55634)
Baoxiang Qin (2156653)
Zhongquan Cai (6704978)
Jijing Luo (217419)

May 2019

Figure S6. Morphology of pds spikelets, showing the different types of elongation of the sterile lem...

Additional file 3: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Qigui Jiang (6704969)
Yindi Zeng (6704972)
Baiyang Yu (6704975)
Weijian Cen (5621723)
Siyuan Lu (239565)
Peilong Jia (4796070)
Xuan Wang (55634)
Baoxiang Qin (2156653)
Zhongquan Cai (6704978)
Jijing Luo (217419)

May 2019

Figure S3. Phenotypes of the elongated sterile lemmas in the spikelets of the pds line. (A) Percenta...

Additional file 4: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Qigui Jiang (6704969)
Yindi Zeng (6704972)
Baiyang Yu (6704975)
Weijian Cen (5621723)
Siyuan Lu (239565)
Peilong Jia (4796070)
Xuan Wang (55634)
Baoxiang Qin (2156653)
Zhongquan Cai (6704978)
Jijing Luo (217419)

May 2019

Figure S4. Scanning electron microscopy (SEM) analysis of the development of the empty glume and rud...

Additional file 4: of Panicle Morphology Mutant 1 (PMM1) determines the inflorescence architecture of rice by controlling brassinosteroid biosynthesis

Yan Li (23143)
Xuemei Li (232384)
Debao Fu (6080798)
Changyin Wu (13801)

December 2018

Figure S2. Phenotype comparison of lamina joint inclination and plant height between the wild type (...

Additional file 1: of Association between sequence variants in panicle development genes and the number of spikelets per panicle in rice

Su Jang (3706168)
Yunjoo Lee (4263067)
Gileung Lee (4263064)
Jeonghwan Seo (4766988)
Dongryung Lee (4766991)
Yoye Yu (519281)
Joong Chin (4263073)
Hee-Jong Koh (45781)

January 2018

Distributions of the panicle size of 205 varieties and 45 selected varieties. (PDF 296Â kb

Additional file 3: of Panicle Morphology Mutant 1 (PMM1) determines the inflorescence architecture of rice by controlling brassinosteroid biosynthesis

Yan Li (23143)
Xuemei Li (232384)
Debao Fu (6080798)
Changyin Wu (13801)

December 2018

Figure S1. Sequence alignment of amino acids of OsDWARF4 and PMM1/OsDWARF11. (a) Sequence alignment ...

Additional file 5: of Panicle Morphology Mutant 1 (PMM1) determines the inflorescence architecture of rice by controlling brassinosteroid biosynthesis

Yan Li (23143)
Xuemei Li (232384)
Debao Fu (6080798)
Changyin Wu (13801)

December 2018

Table S3. Primers for qRT-PCR, genotyping, and plasmid construction. (DOCX 18 kb

Additional file 1: of Short and narrow flag leaf1, a GATA zinc finger domain-containing protein, regulates flag leaf size in rice (Oryza sativa)

Peilong He (5950673)
Xiaowen Wang (15759)
Xiaobo Zhang (77133)
Yudong Jiang (5950676)
Weijiang Tian (5950679)
Xiaoqiong Zhang (3192231)
Yangyang Li (554659)
Ying Sun (23237)
Jia Xie (247149)
Jile Ni (5950682)
Guanghua He (3499151)
Xianchun Sang (572670)

November 2018

Figure S1. The phenotype of snfl1 mutant. (A-B) Plants of WT and snfl1 in the field. (C) A culm of W...

Additional file 1: of A novel Rice QTL qOPW11 Associated with Panicle Weight Affects Panicle and Plant Architecture

Satoshi Okada (385549)
Megumi Sasaki (169762)
Masanori Yamasaki (755934)

September 2018

Figure S1. The histograms (A and B) and boxplot (C) for OPW of RILs from Koshihikari/Yamadanishiki i...

Additional file 2: of Rapid and pervasive development- and tissue-specific homeolog expression partitioning in newly formed inter-subspecific rice segmental allotetraploids

Long Zhao (408020)
Lei Han (150108)
Chaoxia Xiao (5874725)
Xiuyun Lin (136096)
Chunming Xu (136095)
Chunwu Yang (162843)

October 2018

Figure S1. Mean percentage of tissues showing tissue-specific silencing (TSS) of alleles/homeologs i...

Additional file 7: of Multiple areas investigation reveals the genes related to vascular bundles in rice

Cheng Fei (6496997)
Xin Geng (571200)
Zhengjin Xu (4783467)
Quan Xu (554774)

March 2019

Figure S2. Expression patterns of DEGs. (a) Hierarchical clustering of DEGs. (b) GO analysis of the ...

Additional file 2: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Qigui Jiang (6704969)
Yindi Zeng (6704972)
Baiyang Yu (6704975)
Weijian Cen (5621723)
Siyuan Lu (239565)
Peilong Jia (4796070)
Xuan Wang (55634)
Baoxiang Qin (2156653)
Zhongquan Cai (6704978)
Jijing Luo (217419)

May 2019

Figure S2. Comparison of the plant architecture of S142, 430, and pds at the vegetative stage. (A) M...

Additional file 8: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Qigui Jiang (6704969)
Yindi Zeng (6704972)
Baiyang Yu (6704975)
Weijian Cen (5621723)
Siyuan Lu (239565)
Peilong Jia (4796070)
Xuan Wang (55634)
Baoxiang Qin (2156653)
Zhongquan Cai (6704978)
Jijing Luo (217419)

May 2019

Figure S8. The expression pattern analysis of pds1 candidate genes and spikelet development related ...

Additional file 1: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Qigui Jiang (6704969)
Yindi Zeng (6704972)
Baiyang Yu (6704975)
Weijian Cen (5621723)
Siyuan Lu (239565)
Peilong Jia (4796070)
Xuan Wang (55634)
Baoxiang Qin (2156653)
Zhongquan Cai (6704978)
Jijing Luo (217419)

May 2019

Figure S1. Schematic representation of rice plant, panicle architecture, and spikelet development. (...

Additional file 9: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Qigui Jiang (6704969)
Yindi Zeng (6704972)
Baiyang Yu (6704975)
Weijian Cen (5621723)
Siyuan Lu (239565)
Peilong Jia (4796070)
Xuan Wang (55634)
Baoxiang Qin (2156653)
Zhongquan Cai (6704978)
Jijing Luo (217419)

May 2019

Table S1. The primer sequences of related genes using for qPCR. Table S2. The descriptive statistica...

Additional file 6: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Qigui Jiang (6704969)
Yindi Zeng (6704972)
Baiyang Yu (6704975)
Weijian Cen (5621723)
Siyuan Lu (239565)
Peilong Jia (4796070)
Xuan Wang (55634)
Baoxiang Qin (2156653)
Zhongquan Cai (6704978)
Jijing Luo (217419)

May 2019

Figure S6. Morphology of pds spikelets, showing the different types of elongation of the sterile lem...

Additional file 3: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Qigui Jiang (6704969)
Yindi Zeng (6704972)
Baiyang Yu (6704975)
Weijian Cen (5621723)
Siyuan Lu (239565)
Peilong Jia (4796070)
Xuan Wang (55634)
Baoxiang Qin (2156653)
Zhongquan Cai (6704978)
Jijing Luo (217419)

May 2019

Figure S3. Phenotypes of the elongated sterile lemmas in the spikelets of the pds line. (A) Percenta...

Additional file 4: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Qigui Jiang (6704969)
Yindi Zeng (6704972)
Baiyang Yu (6704975)
Weijian Cen (5621723)
Siyuan Lu (239565)
Peilong Jia (4796070)
Xuan Wang (55634)
Baoxiang Qin (2156653)
Zhongquan Cai (6704978)
Jijing Luo (217419)

May 2019

Figure S4. Scanning electron microscopy (SEM) analysis of the development of the empty glume and rud...

Additional file 4: of Panicle Morphology Mutant 1 (PMM1) determines the inflorescence architecture of rice by controlling brassinosteroid biosynthesis

Yan Li (23143)
Xuemei Li (232384)
Debao Fu (6080798)
Changyin Wu (13801)

December 2018

Figure S2. Phenotype comparison of lamina joint inclination and plant height between the wild type (...

Additional file 1: of Association between sequence variants in panicle development genes and the number of spikelets per panicle in rice

Su Jang (3706168)
Yunjoo Lee (4263067)
Gileung Lee (4263064)
Jeonghwan Seo (4766988)
Dongryung Lee (4766991)
Yoye Yu (519281)
Joong Chin (4263073)
Hee-Jong Koh (45781)

January 2018

Distributions of the panicle size of 205 varieties and 45 selected varieties. (PDF 296Â kb

Additional file 3: of Panicle Morphology Mutant 1 (PMM1) determines the inflorescence architecture of rice by controlling brassinosteroid biosynthesis

Yan Li (23143)
Xuemei Li (232384)
Debao Fu (6080798)
Changyin Wu (13801)

December 2018

Figure S1. Sequence alignment of amino acids of OsDWARF4 and PMM1/OsDWARF11. (a) Sequence alignment ...

Additional file 5: of Panicle Morphology Mutant 1 (PMM1) determines the inflorescence architecture of rice by controlling brassinosteroid biosynthesis

Yan Li (23143)
Xuemei Li (232384)
Debao Fu (6080798)
Changyin Wu (13801)

December 2018

Table S3. Primers for qRT-PCR, genotyping, and plasmid construction. (DOCX 18 kb

Additional file 1: of Short and narrow flag leaf1, a GATA zinc finger domain-containing protein, regulates flag leaf size in rice (Oryza sativa)

Peilong He (5950673)
Xiaowen Wang (15759)
Xiaobo Zhang (77133)
Yudong Jiang (5950676)
Weijiang Tian (5950679)
Xiaoqiong Zhang (3192231)
Yangyang Li (554659)
Ying Sun (23237)
Jia Xie (247149)
Jile Ni (5950682)
Guanghua He (3499151)
Xianchun Sang (572670)

November 2018

Figure S1. The phenotype of snfl1 mutant. (A-B) Plants of WT and snfl1 in the field. (C) A culm of W...

Additional file 1: of A novel Rice QTL qOPW11 Associated with Panicle Weight Affects Panicle and Plant Architecture

Satoshi Okada (385549)
Megumi Sasaki (169762)
Masanori Yamasaki (755934)

September 2018

Figure S1. The histograms (A and B) and boxplot (C) for OPW of RILs from Koshihikari/Yamadanishiki i...

Additional file 2: of Rapid and pervasive development- and tissue-specific homeolog expression partitioning in newly formed inter-subspecific rice segmental allotetraploids

Long Zhao (408020)
Lei Han (150108)
Chaoxia Xiao (5874725)
Xiuyun Lin (136096)
Chunming Xu (136095)
Chunwu Yang (162843)

October 2018

Figure S1. Mean percentage of tissues showing tissue-specific silencing (TSS) of alleles/homeologs i...

Additional file 7: of Multiple areas investigation reveals the genes related to vascular bundles in rice

Cheng Fei (6496997)
Xin Geng (571200)
Zhengjin Xu (4783467)
Quan Xu (554774)

March 2019

Figure S2. Expression patterns of DEGs. (a) Hierarchical clustering of DEGs. (b) GO analysis of the ...

Additional file 7: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Abstract

Extracted data

Additional file 7: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Abstract

Extracted data

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