Additional file 9: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Additional file 1: of Expression Divergence as an Evolutionary Alternative Mechanism Adopted by Two Rice Subspecies Against Rice Blast Infection

Zhenhui Zhong (5205878)
Lianyu Lin (5205875)
Meilian Chen (6417794)
Lili Lin (451927)
Xiaofeng Chen (392939)
Yahong Lin (5612837)
Xi Chen (35903)
Zonghua Wang (133934)
Justice Norvienyeku (5558405)
Huakun Zheng (1525624)

March 2019

Table S1. Total number of sequencing reads and mapping results for 30 samples in this study. Table S...

Additional file 2: of Identification of a cold-tolerant locus in rice (Oryza sativa L.) using bulked segregant analysis with a next-generation sequencing strategy

Jian Sun (1234941)
Luomiao Yang (5118575)
Jingguo Wang (564601)
Hualong Liu (5118581)
Hongliang Zheng (222648)
Dongwei Xie (4874992)
Minghui Zhang (298745)
Mingfang Feng (5118572)
Yan Jia (198590)
Hongwei Zhao (62620)
Detang Zou (5118578)

April 2018

Table S1. The PSST of T-pool and S-pool. Table S2. Sequences of specific primers for PSST candidate ...

Additional file 1: Table S1. of Panicle blast 1 (Pb1) resistance is dependent on at least four QTLs in the rice genome

Haruhiko Inoue (4321282)
Mitsuru Nakamura (2349163)
Tatsumi Mizubayashi (4321291)
Akira Takahashi (571709)
Shoji Sugano (4321285)
Shuuichi Fukuoka (4321294)
Nagao Hayashi (4321288)

August 2017

The primers (OsWRKY45, NH1, PR1a, Pb1 and Rubq1) were used for quantitative RT-PCR analysis. The oth...

Additional file 7: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Qigui Jiang (6704969)
Yindi Zeng (6704972)
Baiyang Yu (6704975)
Weijian Cen (5621723)
Siyuan Lu (239565)
Peilong Jia (4796070)
Xuan Wang (55634)
Baoxiang Qin (2156653)
Zhongquan Cai (6704978)
Jijing Luo (217419)

May 2019

Figure S7. Seed morphology of S142, 430, and pds plants. (A) Seeds of S142, 430, and pds. (B) Empty ...

Additional file 2: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Qigui Jiang (6704969)
Yindi Zeng (6704972)
Baiyang Yu (6704975)
Weijian Cen (5621723)
Siyuan Lu (239565)
Peilong Jia (4796070)
Xuan Wang (55634)
Baoxiang Qin (2156653)
Zhongquan Cai (6704978)
Jijing Luo (217419)

May 2019

Figure S2. Comparison of the plant architecture of S142, 430, and pds at the vegetative stage. (A) M...

Additional file 8: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Qigui Jiang (6704969)
Yindi Zeng (6704972)
Baiyang Yu (6704975)
Weijian Cen (5621723)
Siyuan Lu (239565)
Peilong Jia (4796070)
Xuan Wang (55634)
Baoxiang Qin (2156653)
Zhongquan Cai (6704978)
Jijing Luo (217419)

May 2019

Figure S8. The expression pattern analysis of pds1 candidate genes and spikelet development related ...

Additional file 3: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Qigui Jiang (6704969)
Yindi Zeng (6704972)
Baiyang Yu (6704975)
Weijian Cen (5621723)
Siyuan Lu (239565)
Peilong Jia (4796070)
Xuan Wang (55634)
Baoxiang Qin (2156653)
Zhongquan Cai (6704978)
Jijing Luo (217419)

May 2019

Figure S3. Phenotypes of the elongated sterile lemmas in the spikelets of the pds line. (A) Percenta...

Additional file 1: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Qigui Jiang (6704969)
Yindi Zeng (6704972)
Baiyang Yu (6704975)
Weijian Cen (5621723)
Siyuan Lu (239565)
Peilong Jia (4796070)
Xuan Wang (55634)
Baoxiang Qin (2156653)
Zhongquan Cai (6704978)
Jijing Luo (217419)

May 2019

Figure S1. Schematic representation of rice plant, panicle architecture, and spikelet development. (...

Additional file 6: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Qigui Jiang (6704969)
Yindi Zeng (6704972)
Baiyang Yu (6704975)
Weijian Cen (5621723)
Siyuan Lu (239565)
Peilong Jia (4796070)
Xuan Wang (55634)
Baoxiang Qin (2156653)
Zhongquan Cai (6704978)
Jijing Luo (217419)

May 2019

Figure S6. Morphology of pds spikelets, showing the different types of elongation of the sterile lem...

Additional file 4: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Qigui Jiang (6704969)
Yindi Zeng (6704972)
Baiyang Yu (6704975)
Weijian Cen (5621723)
Siyuan Lu (239565)
Peilong Jia (4796070)
Xuan Wang (55634)
Baoxiang Qin (2156653)
Zhongquan Cai (6704978)
Jijing Luo (217419)

May 2019

Figure S4. Scanning electron microscopy (SEM) analysis of the development of the empty glume and rud...

Additional file 1: of Association between sequence variants in panicle development genes and the number of spikelets per panicle in rice

Su Jang (3706168)
Yunjoo Lee (4263067)
Gileung Lee (4263064)
Jeonghwan Seo (4766988)
Dongryung Lee (4766991)
Yoye Yu (519281)
Joong Chin (4263073)
Hee-Jong Koh (45781)

January 2018

Distributions of the panicle size of 205 varieties and 45 selected varieties. (PDF 296Â kb

Additional file 2: of A novel Rice QTL qOPW11 Associated with Panicle Weight Affects Panicle and Plant Architecture

Satoshi Okada (385549)
Megumi Sasaki (169762)
Masanori Yamasaki (755934)

September 2018

Table S1. Genotypes of RILs. Table S2. Additional markers using genotypes of RILs. Table S3Â Days to...

Additional file 5: of Panicle Morphology Mutant 1 (PMM1) determines the inflorescence architecture of rice by controlling brassinosteroid biosynthesis

Yan Li (23143)
Xuemei Li (232384)
Debao Fu (6080798)
Changyin Wu (13801)

December 2018

Table S3. Primers for qRT-PCR, genotyping, and plasmid construction. (DOCX 18 kb

Additional file 9: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

Zhiming Yu (395119)
Lixiang Dong (4904425)
Zhifang Jiang (4904431)
Keke Yi (477808)
Jianhua Zhang (6347)
Zhongchen Zhang (470542)
Zhenxing Zhu (509266)
Yuhuan Wu (3815479)
Maojun Xu (447937)
Jun Ni (68173)

October 2018

Table S3. Expression levels of all genes. The expression levels (FPKM) of each gene in three replica...

Additional file 1: of Genetic analysis of male sterility obtained from a rice cultivar Lebed backcrossed with Taichung 65

Tetsuya Murakami (3038811)
Tomohiko Kazama (697213)
Kinya Toriyama (3152841)

May 2018

Table S1. Seed setting rates of BC5F1 plants obtained from fertile BC4F1 plants. Table S2. Seed sett...

Additional file 1: of Expression Divergence as an Evolutionary Alternative Mechanism Adopted by Two Rice Subspecies Against Rice Blast Infection

Zhenhui Zhong (5205878)
Lianyu Lin (5205875)
Meilian Chen (6417794)
Lili Lin (451927)
Xiaofeng Chen (392939)
Yahong Lin (5612837)
Xi Chen (35903)
Zonghua Wang (133934)
Justice Norvienyeku (5558405)
Huakun Zheng (1525624)

March 2019

Table S1. Total number of sequencing reads and mapping results for 30 samples in this study. Table S...

Additional file 2: of Identification of a cold-tolerant locus in rice (Oryza sativa L.) using bulked segregant analysis with a next-generation sequencing strategy

Jian Sun (1234941)
Luomiao Yang (5118575)
Jingguo Wang (564601)
Hualong Liu (5118581)
Hongliang Zheng (222648)
Dongwei Xie (4874992)
Minghui Zhang (298745)
Mingfang Feng (5118572)
Yan Jia (198590)
Hongwei Zhao (62620)
Detang Zou (5118578)

April 2018

Table S1. The PSST of T-pool and S-pool. Table S2. Sequences of specific primers for PSST candidate ...

Additional file 1: Table S1. of Panicle blast 1 (Pb1) resistance is dependent on at least four QTLs in the rice genome

Haruhiko Inoue (4321282)
Mitsuru Nakamura (2349163)
Tatsumi Mizubayashi (4321291)
Akira Takahashi (571709)
Shoji Sugano (4321285)
Shuuichi Fukuoka (4321294)
Nagao Hayashi (4321288)

August 2017

The primers (OsWRKY45, NH1, PR1a, Pb1 and Rubq1) were used for quantitative RT-PCR analysis. The oth...

Additional file 7: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Qigui Jiang (6704969)
Yindi Zeng (6704972)
Baiyang Yu (6704975)
Weijian Cen (5621723)
Siyuan Lu (239565)
Peilong Jia (4796070)
Xuan Wang (55634)
Baoxiang Qin (2156653)
Zhongquan Cai (6704978)
Jijing Luo (217419)

May 2019

Figure S7. Seed morphology of S142, 430, and pds plants. (A) Seeds of S142, 430, and pds. (B) Empty ...

Additional file 2: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Qigui Jiang (6704969)
Yindi Zeng (6704972)
Baiyang Yu (6704975)
Weijian Cen (5621723)
Siyuan Lu (239565)
Peilong Jia (4796070)
Xuan Wang (55634)
Baoxiang Qin (2156653)
Zhongquan Cai (6704978)
Jijing Luo (217419)

May 2019

Figure S2. Comparison of the plant architecture of S142, 430, and pds at the vegetative stage. (A) M...

Additional file 8: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Qigui Jiang (6704969)
Yindi Zeng (6704972)
Baiyang Yu (6704975)
Weijian Cen (5621723)
Siyuan Lu (239565)
Peilong Jia (4796070)
Xuan Wang (55634)
Baoxiang Qin (2156653)
Zhongquan Cai (6704978)
Jijing Luo (217419)

May 2019

Figure S8. The expression pattern analysis of pds1 candidate genes and spikelet development related ...

Additional file 3: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Qigui Jiang (6704969)
Yindi Zeng (6704972)
Baiyang Yu (6704975)
Weijian Cen (5621723)
Siyuan Lu (239565)
Peilong Jia (4796070)
Xuan Wang (55634)
Baoxiang Qin (2156653)
Zhongquan Cai (6704978)
Jijing Luo (217419)

May 2019

Figure S3. Phenotypes of the elongated sterile lemmas in the spikelets of the pds line. (A) Percenta...

Additional file 1: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Qigui Jiang (6704969)
Yindi Zeng (6704972)
Baiyang Yu (6704975)
Weijian Cen (5621723)
Siyuan Lu (239565)
Peilong Jia (4796070)
Xuan Wang (55634)
Baoxiang Qin (2156653)
Zhongquan Cai (6704978)
Jijing Luo (217419)

May 2019

Figure S1. Schematic representation of rice plant, panicle architecture, and spikelet development. (...

Additional file 6: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Qigui Jiang (6704969)
Yindi Zeng (6704972)
Baiyang Yu (6704975)
Weijian Cen (5621723)
Siyuan Lu (239565)
Peilong Jia (4796070)
Xuan Wang (55634)
Baoxiang Qin (2156653)
Zhongquan Cai (6704978)
Jijing Luo (217419)

May 2019

Figure S6. Morphology of pds spikelets, showing the different types of elongation of the sterile lem...

Additional file 4: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Qigui Jiang (6704969)
Yindi Zeng (6704972)
Baiyang Yu (6704975)
Weijian Cen (5621723)
Siyuan Lu (239565)
Peilong Jia (4796070)
Xuan Wang (55634)
Baoxiang Qin (2156653)
Zhongquan Cai (6704978)
Jijing Luo (217419)

May 2019

Figure S4. Scanning electron microscopy (SEM) analysis of the development of the empty glume and rud...

Additional file 1: of Association between sequence variants in panicle development genes and the number of spikelets per panicle in rice

Su Jang (3706168)
Yunjoo Lee (4263067)
Gileung Lee (4263064)
Jeonghwan Seo (4766988)
Dongryung Lee (4766991)
Yoye Yu (519281)
Joong Chin (4263073)
Hee-Jong Koh (45781)

January 2018

Distributions of the panicle size of 205 varieties and 45 selected varieties. (PDF 296Â kb

Additional file 2: of A novel Rice QTL qOPW11 Associated with Panicle Weight Affects Panicle and Plant Architecture

Satoshi Okada (385549)
Megumi Sasaki (169762)
Masanori Yamasaki (755934)

September 2018

Table S1. Genotypes of RILs. Table S2. Additional markers using genotypes of RILs. Table S3Â Days to...

Additional file 5: of Panicle Morphology Mutant 1 (PMM1) determines the inflorescence architecture of rice by controlling brassinosteroid biosynthesis

Yan Li (23143)
Xuemei Li (232384)
Debao Fu (6080798)
Changyin Wu (13801)

December 2018

Table S3. Primers for qRT-PCR, genotyping, and plasmid construction. (DOCX 18 kb

Additional file 9: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

Zhiming Yu (395119)
Lixiang Dong (4904425)
Zhifang Jiang (4904431)
Keke Yi (477808)
Jianhua Zhang (6347)
Zhongchen Zhang (470542)
Zhenxing Zhu (509266)
Yuhuan Wu (3815479)
Maojun Xu (447937)
Jun Ni (68173)

October 2018

Table S3. Expression levels of all genes. The expression levels (FPKM) of each gene in three replica...

Additional file 1: of Genetic analysis of male sterility obtained from a rice cultivar Lebed backcrossed with Taichung 65

Tetsuya Murakami (3038811)
Tomohiko Kazama (697213)
Kinya Toriyama (3152841)

May 2018

Table S1. Seed setting rates of BC5F1 plants obtained from fertile BC4F1 plants. Table S2. Seed sett...

Additional file 1: of Expression Divergence as an Evolutionary Alternative Mechanism Adopted by Two Rice Subspecies Against Rice Blast Infection

Zhenhui Zhong (5205878)
Lianyu Lin (5205875)
Meilian Chen (6417794)
Lili Lin (451927)
Xiaofeng Chen (392939)
Yahong Lin (5612837)
Xi Chen (35903)
Zonghua Wang (133934)
Justice Norvienyeku (5558405)
Huakun Zheng (1525624)

March 2019

Table S1. Total number of sequencing reads and mapping results for 30 samples in this study. Table S...

Additional file 2: of Identification of a cold-tolerant locus in rice (Oryza sativa L.) using bulked segregant analysis with a next-generation sequencing strategy

Jian Sun (1234941)
Luomiao Yang (5118575)
Jingguo Wang (564601)
Hualong Liu (5118581)
Hongliang Zheng (222648)
Dongwei Xie (4874992)
Minghui Zhang (298745)
Mingfang Feng (5118572)
Yan Jia (198590)
Hongwei Zhao (62620)
Detang Zou (5118578)

April 2018

Table S1. The PSST of T-pool and S-pool. Table S2. Sequences of specific primers for PSST candidate ...

Additional file 1: Table S1. of Panicle blast 1 (Pb1) resistance is dependent on at least four QTLs in the rice genome

Haruhiko Inoue (4321282)
Mitsuru Nakamura (2349163)
Tatsumi Mizubayashi (4321291)
Akira Takahashi (571709)
Shoji Sugano (4321285)
Shuuichi Fukuoka (4321294)
Nagao Hayashi (4321288)

August 2017

The primers (OsWRKY45, NH1, PR1a, Pb1 and Rubq1) were used for quantitative RT-PCR analysis. The oth...

Additional file 9: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Abstract

Extracted data

Additional file 9: of The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets

Abstract

Extracted data

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