Additional file 2: of Selectively hampered activation of lymph node-resident dendritic cells precedes profound T cell suppression and metastatic spread in the breast cancer sentinel lymph node

Kim van Pul (6727361)
Ronald Vuylsteke (6727367)
Rieneke van de Ven (434760)
Elisabeth te Velde (6727376)
Emiel Rutgers (3822181)
Petrousjka van den Tol (6727382)
Hein Stockmann (6727388)
Tanja de Gruijl (3539363)

Publication date

May 2019

DOI

10.6084/m9.figshare.8172629.v1

Abstract

Figure S1. Flowcytometric gating of cell subsets. Gating strategies for the DC subsets as well as Tregs and MDSC and for T cell activation/checkpoint markers (PDF 495 kb

Extracted data

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Data Protection

Additional file 2: of Selectively hampered activation of lymph node-resident dendritic cells precedes profound T cell suppression and metastatic spread in the breast cancer sentinel lymph node

Kim van Pul (6727361)
Ronald Vuylsteke (6727367)
Rieneke van de Ven (434760)
Elisabeth te Velde (6727376)
Emiel Rutgers (3822181)
Petrousjka van den Tol (6727382)
Hein Stockmann (6727388)
Tanja de Gruijl (3539363)

Open link

Publication date

May 2019

DOI

10.6084/m9.figshare.8172629.v1

Abstract

Figure S1. Flowcytometric gating of cell subsets. Gating strategies for the DC subsets as well as Tregs and MDSC and for T cell activation/checkpoint markers (PDF 495 kb

Extracted data

R-M Amini (6561467)
G. Enblad (6561470)
P. Hollander (3401375)
S. Laszlo (6561473)
E. Eriksson (6561476)
K. Ayoola Gustafsson (6561479)
A. Loskog (6561482)
I. Thรถrn (6561488)

April 2019

Gating strategies. The different gating strategies for the different immune cells are presented. (PP...

Additional file 1: of Dissimilar patterns of tumor-infiltrating immune cells at the invasive tumor front and tumor center are associated with response to neoadjuvant chemotherapy in primary breast cancer

Lisa König (3580973)
Fabian Mairinger (6279713)
Oliver Hoffmann (3580964)
Ann-Kathrin Bittner (3580961)
Kurt Schmid (3491198)
Rainer Kimmig (58539)
Sabine Kasimir-Bauer (3580967)
Agnes Bankfalvi (284668)

February 2019

Figure S1. Representative immunohistochemistry (IHC) staining images for CD8, CD4, CD20 and CD68. Im...

Additional file 1 of Regulatory and effector T cell subsets in tumor-draining lymph nodes of patients with squamous cell carcinoma of head and neck

Marzieh Norouzian (11975387)
Fereshteh Mehdipour (14120472)
Mohammad Javad Ashraf (6676580)
Bijan Khademi (10418997)
Abbas Ghaderi (836259)

November 2022

Additional file 1: Fig. S1. Flow cytometry analysis of unstimulated CD4+ T cell subsets in the tumor...

Additional file 3: of Selectively hampered activation of lymph node-resident dendritic cells precedes profound T cell suppression and metastatic spread in the breast cancer sentinel lymph node

Kim van Pul (6727361)
Ronald Vuylsteke (6727367)
Rieneke van de Ven (434760)
Elisabeth te Velde (6727376)
Emiel Rutgers (3822181)
Petrousjka van den Tol (6727382)
Hein Stockmann (6727388)
Tanja de Gruijl (3539363)

May 2019

Figure S2. Frequency and activation state of DC subsets in HLN compared to metastasis negative (SLN-...

Additional file 1: of Selectively hampered activation of lymph node-resident dendritic cells precedes profound T cell suppression and metastatic spread in the breast cancer sentinel lymph node

Kim van Pul (6727361)
Ronald Vuylsteke (6727367)
Rieneke van de Ven (434760)
Elisabeth te Velde (6727376)
Emiel Rutgers (3822181)
Petrousjka van den Tol (6727382)
Hein Stockmann (6727388)
Tanja de Gruijl (3539363)

May 2019

Table S1. Phenotype of immune cell subsets. An overview of the used phenotypic definitions for each ...

Additional file 6: of Selectively hampered activation of lymph node-resident dendritic cells precedes profound T cell suppression and metastatic spread in the breast cancer sentinel lymph node

Kim van Pul (6727361)
Ronald Vuylsteke (6727367)
Rieneke van de Ven (434760)
Elisabeth te Velde (6727376)
Emiel Rutgers (3822181)
Petrousjka van den Tol (6727382)
Hein Stockmann (6727388)
Tanja de Gruijl (3539363)

May 2019

Figure S5. Frequencies and expression of surface molecules of DC subsets in relation to BrC subtype ...

Additional file 5: of Selectively hampered activation of lymph node-resident dendritic cells precedes profound T cell suppression and metastatic spread in the breast cancer sentinel lymph node

Kim van Pul (6727361)
Ronald Vuylsteke (6727367)
Rieneke van de Ven (434760)
Elisabeth te Velde (6727376)
Emiel Rutgers (3822181)
Petrousjka van den Tol (6727382)
Hein Stockmann (6727388)
Tanja de Gruijl (3539363)

May 2019

Figure S4. TLR7 and TLR8 expression in LN DC subsets and R848-induced activation in tumor negative B...

Additional file 4: of Selectively hampered activation of lymph node-resident dendritic cells precedes profound T cell suppression and metastatic spread in the breast cancer sentinel lymph node

Kim van Pul (6727361)
Ronald Vuylsteke (6727367)
Rieneke van de Ven (434760)
Elisabeth te Velde (6727376)
Emiel Rutgers (3822181)
Petrousjka van den Tol (6727382)
Hein Stockmann (6727388)
Tanja de Gruijl (3539363)

May 2019

Figure S3. Prognostic effect of LNRcDC CD86 expression levels. Kaplan Meier curves of estimated DFS ...

Additional file 1: of Improved Natural Killer cell activity and retained anti-tumor CD8+ T cell responses contribute to the induction of a pathological complete response in HER2-positive breast cancer patients undergoing neoadjuvant chemotherapy

E Muraro (3411881)
E Comaro (3411893)
R Talamini (3411887)
E Turchet (3411896)
G Miolo (3411878)
S Scalone (3411866)
L Militello (3411890)
D Lombardi (3411884)
S Spazzapan (3411872)
T Perin (3411902)
S Massarut (3411869)
D Crivellari (3411899)
Riccardo Dolcetti (10415)
D Martorelli (3411875)

June 2015

Flow cytometry gating strategy. Representative flow cytometry plots showing the gating strategy used...

Additional file 1: of Altered monocyte differentiation and macrophage polarization patterns in patients with breast cancer

Chih-Hsing Hung (312189)
Fang-Ming Chen (285108)
Yi-Ching Lin (391261)
Mei-Lan Tsai (5055620)
Shih-Ling Wang (5055623)
Yen-Chun Chen (408051)
Yi-Ting Chen (331479)
Ming-Feng Hou (146776)

April 2018

The gating strategy and histograms with the gating of all the antibodies by flow cytometry. Sample d...

Additional file 1: of Mature dendritic cells correlate with favorable immune infiltrate and improved prognosis in ovarian carcinoma patients

Iva Truxova (6067376)
Lenka Kasikova (6067379)
Michal Hensler (137972)
Petr Skapa (208137)
Jan Laco (574933)
Ladislav Pecen (656455)
Lucie Belicova (6067382)
Ivan Praznovec (6067385)
Michael Halaska (6067388)
Tomas Brtnicky (6067391)
Eva Salkova (6067394)
Lukas Rob (348256)
Roman Kodet (6067397)
Jeremy Goc (6067400)
Catherine Sautes-Fridman (6067406)
Wolf Fridman (6067409)
Ales Ryska (4928005)
Lorenzo Galluzzi (82794)
Radek Spisek (607200)
Jitka Fucikova (6067415)

December 2018

Figure S1. Density of mature DCs in the tumor stroma and malignant cell nest of patients with HGSCs....

Additional file 1: of Profiling the B/T cell receptor repertoire of lymphocyte derived cell lines

Kar-Tong Tan (3811105)
Ling-Wen Ding (3811114)
Qiao-Yang Sun (3811123)
Zhen-Tang Lao (3811120)
Wenwen Chien (3811111)
Xi Ren (2809030)
Jin-Fen Xiao (5809157)
Xin Loh (5809160)
Liang Xu (102656)
Michael Lill (3811102)
Anand Mayakonda (3811108)
De-Chen Lin (3811117)
Henry Yang (204980)
H. Koeffler (3586466)

October 2018

Figure S1. Expression of CD19/CD20, CD79A/B and RAG1/RAG2 in blood cancer cell lines. X axis: 164 bl...

Additional file 1: of Effective cancer immunotherapy by natural mouse conventional type-1 dendritic cells bearing dead tumor antigen

Stefanie Wculek (6566330)
JoaquĂn Amores-Iniesta (6566342)
Ruth Conde-Garrosa (6566336)
SofĂa Khouili (6566345)
Ignacio Melero (81908)
David Sancho (5117801)

April 2019

Figure S1. Isolation and phenotypic analysis of cDC1s from the spleen of FLT3L-expressing B16 tumor-...

Additional file 1: Table S3. of Tumour-draining axillary lymph nodes in patients with large and locally advanced breast cancers undergoing neoadjuvant chemotherapy (NAC): the crucial contribution of immune cells (effector, regulatory) and cytokines (Th1, Th2) to immune-mediated tumour cell death induced by NAC

Viriya Kaewkangsadan (4816371)
Chandan Verma (4816380)
Jennifer Eremin (4816374)
Gerard Cowley (4816377)
Mohammad Ilyas (217478)
Oleg Eremin (2621164)

February 2018

Patient and Tumour Characteristics, Responses to Neoadjuvant Chemotherapy (nâ=â33). (DOCX 56Â kb

Additional file 1: of Altered profile of immune regulatory cells in the peripheral blood of lymphoma patients

R-M Amini (6561467)
G. Enblad (6561470)
P. Hollander (3401375)
S. Laszlo (6561473)
E. Eriksson (6561476)
K. Ayoola Gustafsson (6561479)
A. Loskog (6561482)
I. Thรถrn (6561488)

April 2019

Gating strategies. The different gating strategies for the different immune cells are presented. (PP...

Lisa König (3580973)
Fabian Mairinger (6279713)
Oliver Hoffmann (3580964)
Ann-Kathrin Bittner (3580961)
Kurt Schmid (3491198)
Rainer Kimmig (58539)
Sabine Kasimir-Bauer (3580967)
Agnes Bankfalvi (284668)

February 2019

Figure S1. Representative immunohistochemistry (IHC) staining images for CD8, CD4, CD20 and CD68. Im...

Additional file 1 of Regulatory and effector T cell subsets in tumor-draining lymph nodes of patients with squamous cell carcinoma of head and neck

Marzieh Norouzian (11975387)
Fereshteh Mehdipour (14120472)
Mohammad Javad Ashraf (6676580)
Bijan Khademi (10418997)
Abbas Ghaderi (836259)

November 2022

Additional file 1: Fig. S1. Flow cytometry analysis of unstimulated CD4+ T cell subsets in the tumor...

Additional file 3: of Selectively hampered activation of lymph node-resident dendritic cells precedes profound T cell suppression and metastatic spread in the breast cancer sentinel lymph node

Kim van Pul (6727361)
Ronald Vuylsteke (6727367)
Rieneke van de Ven (434760)
Elisabeth te Velde (6727376)
Emiel Rutgers (3822181)
Petrousjka van den Tol (6727382)
Hein Stockmann (6727388)
Tanja de Gruijl (3539363)

May 2019

Figure S2. Frequency and activation state of DC subsets in HLN compared to metastasis negative (SLN-...

Additional file 1: of Selectively hampered activation of lymph node-resident dendritic cells precedes profound T cell suppression and metastatic spread in the breast cancer sentinel lymph node

Kim van Pul (6727361)
Ronald Vuylsteke (6727367)
Rieneke van de Ven (434760)
Elisabeth te Velde (6727376)
Emiel Rutgers (3822181)
Petrousjka van den Tol (6727382)
Hein Stockmann (6727388)
Tanja de Gruijl (3539363)

May 2019

Table S1. Phenotype of immune cell subsets. An overview of the used phenotypic definitions for each ...

Additional file 6: of Selectively hampered activation of lymph node-resident dendritic cells precedes profound T cell suppression and metastatic spread in the breast cancer sentinel lymph node

Kim van Pul (6727361)
Ronald Vuylsteke (6727367)
Rieneke van de Ven (434760)
Elisabeth te Velde (6727376)
Emiel Rutgers (3822181)
Petrousjka van den Tol (6727382)
Hein Stockmann (6727388)
Tanja de Gruijl (3539363)

May 2019

Figure S5. Frequencies and expression of surface molecules of DC subsets in relation to BrC subtype ...

Additional file 5: of Selectively hampered activation of lymph node-resident dendritic cells precedes profound T cell suppression and metastatic spread in the breast cancer sentinel lymph node

Kim van Pul (6727361)
Ronald Vuylsteke (6727367)
Rieneke van de Ven (434760)
Elisabeth te Velde (6727376)
Emiel Rutgers (3822181)
Petrousjka van den Tol (6727382)
Hein Stockmann (6727388)
Tanja de Gruijl (3539363)

May 2019

Figure S4. TLR7 and TLR8 expression in LN DC subsets and R848-induced activation in tumor negative B...

Additional file 4: of Selectively hampered activation of lymph node-resident dendritic cells precedes profound T cell suppression and metastatic spread in the breast cancer sentinel lymph node

Kim van Pul (6727361)
Ronald Vuylsteke (6727367)
Rieneke van de Ven (434760)
Elisabeth te Velde (6727376)
Emiel Rutgers (3822181)
Petrousjka van den Tol (6727382)
Hein Stockmann (6727388)
Tanja de Gruijl (3539363)

May 2019

Figure S3. Prognostic effect of LNRcDC CD86 expression levels. Kaplan Meier curves of estimated DFS ...

E Muraro (3411881)
E Comaro (3411893)
R Talamini (3411887)
E Turchet (3411896)
G Miolo (3411878)
S Scalone (3411866)
L Militello (3411890)
D Lombardi (3411884)
S Spazzapan (3411872)
T Perin (3411902)
S Massarut (3411869)
D Crivellari (3411899)
Riccardo Dolcetti (10415)
D Martorelli (3411875)

June 2015

Flow cytometry gating strategy. Representative flow cytometry plots showing the gating strategy used...

Additional file 1: of Altered monocyte differentiation and macrophage polarization patterns in patients with breast cancer

Chih-Hsing Hung (312189)
Fang-Ming Chen (285108)
Yi-Ching Lin (391261)
Mei-Lan Tsai (5055620)
Shih-Ling Wang (5055623)
Yen-Chun Chen (408051)
Yi-Ting Chen (331479)
Ming-Feng Hou (146776)

April 2018

The gating strategy and histograms with the gating of all the antibodies by flow cytometry. Sample d...

Additional file 1: of Mature dendritic cells correlate with favorable immune infiltrate and improved prognosis in ovarian carcinoma patients

Iva Truxova (6067376)
Lenka Kasikova (6067379)
Michal Hensler (137972)
Petr Skapa (208137)
Jan Laco (574933)
Ladislav Pecen (656455)
Lucie Belicova (6067382)
Ivan Praznovec (6067385)
Michael Halaska (6067388)
Tomas Brtnicky (6067391)
Eva Salkova (6067394)
Lukas Rob (348256)
Roman Kodet (6067397)
Jeremy Goc (6067400)
Catherine Sautes-Fridman (6067406)
Wolf Fridman (6067409)
Ales Ryska (4928005)
Lorenzo Galluzzi (82794)
Radek Spisek (607200)
Jitka Fucikova (6067415)

December 2018

Figure S1. Density of mature DCs in the tumor stroma and malignant cell nest of patients with HGSCs....

Additional file 1: of Profiling the B/T cell receptor repertoire of lymphocyte derived cell lines

Kar-Tong Tan (3811105)
Ling-Wen Ding (3811114)
Qiao-Yang Sun (3811123)
Zhen-Tang Lao (3811120)
Wenwen Chien (3811111)
Xi Ren (2809030)
Jin-Fen Xiao (5809157)
Xin Loh (5809160)
Liang Xu (102656)
Michael Lill (3811102)
Anand Mayakonda (3811108)
De-Chen Lin (3811117)
Henry Yang (204980)
H. Koeffler (3586466)

October 2018

Figure S1. Expression of CD19/CD20, CD79A/B and RAG1/RAG2 in blood cancer cell lines. X axis: 164 bl...

Additional file 1: of Effective cancer immunotherapy by natural mouse conventional type-1 dendritic cells bearing dead tumor antigen

Stefanie Wculek (6566330)
JoaquĂn Amores-Iniesta (6566342)
Ruth Conde-Garrosa (6566336)
SofĂa Khouili (6566345)
Ignacio Melero (81908)
David Sancho (5117801)

April 2019

Figure S1. Isolation and phenotypic analysis of cDC1s from the spleen of FLT3L-expressing B16 tumor-...

Viriya Kaewkangsadan (4816371)
Chandan Verma (4816380)
Jennifer Eremin (4816374)
Gerard Cowley (4816377)
Mohammad Ilyas (217478)
Oleg Eremin (2621164)

February 2018

Patient and Tumour Characteristics, Responses to Neoadjuvant Chemotherapy (nâ=â33). (DOCX 56Â kb

Additional file 1: of Altered profile of immune regulatory cells in the peripheral blood of lymphoma patients

R-M Amini (6561467)
G. Enblad (6561470)
P. Hollander (3401375)
S. Laszlo (6561473)
E. Eriksson (6561476)
K. Ayoola Gustafsson (6561479)
A. Loskog (6561482)
I. Thรถrn (6561488)

April 2019

Gating strategies. The different gating strategies for the different immune cells are presented. (PP...

Lisa König (3580973)
Fabian Mairinger (6279713)
Oliver Hoffmann (3580964)
Ann-Kathrin Bittner (3580961)
Kurt Schmid (3491198)
Rainer Kimmig (58539)
Sabine Kasimir-Bauer (3580967)
Agnes Bankfalvi (284668)

February 2019

Figure S1. Representative immunohistochemistry (IHC) staining images for CD8, CD4, CD20 and CD68. Im...

Additional file 1 of Regulatory and effector T cell subsets in tumor-draining lymph nodes of patients with squamous cell carcinoma of head and neck

Marzieh Norouzian (11975387)
Fereshteh Mehdipour (14120472)
Mohammad Javad Ashraf (6676580)
Bijan Khademi (10418997)
Abbas Ghaderi (836259)

November 2022

Additional file 1: Fig. S1. Flow cytometry analysis of unstimulated CD4+ T cell subsets in the tumor...

Additional file 2: of Selectively hampered activation of lymph node-resident dendritic cells precedes profound T cell suppression and metastatic spread in the breast cancer sentinel lymph node

Abstract

Extracted data

Additional file 2: of Selectively hampered activation of lymph node-resident dendritic cells precedes profound T cell suppression and metastatic spread in the breast cancer sentinel lymph node

Abstract

Extracted data

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