Presented are the fractions of hydrophobic amino acids in the peptides conceptually translated from the last 16 codons of the coding region (CDS), region 1, and region 2 in 172 read-through genes and 6,399 non-read-through genes of the yeast (A) or 294 read-through genes and 11,389 non-read-through genes in the fruit fly (B). Error bars show standard errors determined by bootstrapping genes. One-tailed P-value is based on respectively bootstrapping genes of the two groups being compared.</p
In some mRNA sequences, namely those of formyl peptide receptors and chemokine CXC receptors 4, it h...
<p>The differences in ω value in both non-flying insects (compared on the left with white color) and...
Experimental evidence shows that synonymous mutations can have important consequences on genetic fit...
The read-through genes used are from [8, 9], whereas all other genes are treated as non-read-through...
The read-through rate is estimated by the ribosome profiling RPKM of region 1 relative to that of th...
“TGACA” and “TGACT” (stop codon underlined) are two previously identified sequence motifs conducive ...
De novo protein-coding innovations sometimes emerge from ancestrally noncoding DNA, despite the expe...
<p>(A) Kyte and Doolittle hydrophobicity plot of <i>Drosophila</i> Xbp1<sup>unspliced</sup>, indicat...
Stop-codon read-through refers to the phenomenon that a ribosome goes past the stop codon and contin...
Abstract. Long amino acid repeats are often observed in eukaryotic proteins. In humans, several neur...
<p>Each triangle or cross represents for a single gene. The dashed lines represent a 2-fold over-exp...
<p><b>A:</b> Scatterplot comparing readthrough and expression, including only those genes that passe...
Additional file 7: Figure S2. Normalized amino acid hydrophobicity values of evolved scale. Shown is...
The possible causes of variation on amino acid composition in the yeast Saccharomyces cerevisiae wer...
Experimental evidence shows that synonymous mutations can have important consequences on genetic fit...
In some mRNA sequences, namely those of formyl peptide receptors and chemokine CXC receptors 4, it h...
<p>The differences in ω value in both non-flying insects (compared on the left with white color) and...
Experimental evidence shows that synonymous mutations can have important consequences on genetic fit...
The read-through genes used are from [8, 9], whereas all other genes are treated as non-read-through...
The read-through rate is estimated by the ribosome profiling RPKM of region 1 relative to that of th...
“TGACA” and “TGACT” (stop codon underlined) are two previously identified sequence motifs conducive ...
De novo protein-coding innovations sometimes emerge from ancestrally noncoding DNA, despite the expe...
<p>(A) Kyte and Doolittle hydrophobicity plot of <i>Drosophila</i> Xbp1<sup>unspliced</sup>, indicat...
Stop-codon read-through refers to the phenomenon that a ribosome goes past the stop codon and contin...
Abstract. Long amino acid repeats are often observed in eukaryotic proteins. In humans, several neur...
<p>Each triangle or cross represents for a single gene. The dashed lines represent a 2-fold over-exp...
<p><b>A:</b> Scatterplot comparing readthrough and expression, including only those genes that passe...
Additional file 7: Figure S2. Normalized amino acid hydrophobicity values of evolved scale. Shown is...
The possible causes of variation on amino acid composition in the yeast Saccharomyces cerevisiae wer...
Experimental evidence shows that synonymous mutations can have important consequences on genetic fit...
In some mRNA sequences, namely those of formyl peptide receptors and chemokine CXC receptors 4, it h...
<p>The differences in ω value in both non-flying insects (compared on the left with white color) and...
Experimental evidence shows that synonymous mutations can have important consequences on genetic fit...