Additional file 9 of Phylogenetic signal from rearrangements in 18 Anopheles species by joint scaffolding extant and ancestral genomes

Figure S8. Precision and recall statistics for scaffolding adjacencies on three artificially fragmented genomes (A.alb: Anopheles albimanus, A.ara: Anopheles arabiensis and A.dir: Anopheles dirus), when gene orientations are not accounted for. Left graph: results with 50% of reads. Right graph: results with all reads. The different methods results are plotted with the precision on the Y axis and the recall on the X axis. For ADseq and AD, results for three different adjacency support threshold (0.1, 0.5 and 0.8) before genome linearization are plotted and represented with a color gradient. These results show similar results to Fig. 2 showing that for most of the predicted adjacencies the three methods infer the correct gene orientation. (PDF 106 kb