Additional file 1: Figure S1. of The aquatic animalsâ transcriptome resource for comparative functional analysis

Additional file 1: Table S1. of Heterogeneous natural selection on oxidative phosphorylation genes among fishes with extreme high and low aerobic performance

Feifei Zhang (105135)
Richard Broughton (3587444)

August 2015

Species list with mitochondrial genome accession number from NCBI. Table S2. PCR primers used for nu...

Additional file 1: of Evolutionary divergence of 3â UTRs in cichlid fishes

Peiwen Xiong (5258015)
C. Hulsey (5338370)
Axel Meyer (15546)
Paolo Franchini (433788)

June 2018

Table S1. Genomic and transcriptomic data of the nine teleost fish species included in this study. (...

Additional file 1: of Nutraceutical values of fish demand their ecological genetic studies: a short review

Biswaranjan Paital (4877383)

February 2018

Figure S1. Literature in PubMed about ecogenomics, climate change, and conservation of animals espec...

The aquatic animals’ transcriptome resource for comparative functional analysis

Chih-Hung Chou
Hsi-Yuan Huang
Wei-Chih Huang
Sheng-Da Hsu
Chung-Der Hsiao
Chia-Yu Liu
Yu-Hung Chen
Yu-Chen Liu
Wei-Yun Huang
Meng-Lin Lee
Yi-Chang Chen
Hsien-Da Huang

May 2018

Abstract Background Aquatic animals have great economic and ecological importance. Among them, non-m...

Additional file 1: of RNA-Seq analysis of differentially expressed genes relevant to innate and adaptive immunity in cecropin P1 transgenic rainbow trout (Oncorhynchus mykiss)

Yueh-Chiang Han (5874644)
Chun-Mean Lin (5874647)
Thomas Chen (247817)

October 2018

Supplemental figures for pie charts of qualities of clean reads and results of sequencing saturation...

Additional file 1: of RNA-Seq in Mytilus galloprovincialis: comparative transcriptomics and expression profiles among different tissues

Rebeca Moreira (170749)
Patricia Pereiro (164424)
Carlos Canchaya (255570)
David Posada (19469)
Antonio Figueras (82634)
Beatriz Novoa (82631)

September 2015

Table listing Mytilus galloprovincialis transcripts, including the sequence, length, RPKM, descripti...

Additional file 1: of De novo transcriptome assembly and positive selection analysis of an individual deep-sea fish

Yi Lan (3356099)
Jin Sun (117866)
Ting Xu (215531)
Chong Chen (360710)
Renmao Tian (3244935)
Jian-Wen Qiu (416567)
Pei-Yuan Qian (124761)

May 2018

Table S1. Codon usage among Aldrovandia affinis, Astyanax mexicanus, Gadus morhua and Xiphophorus ma...

Additional file 1: Table S1. of Molecular evolution of globin genes in Gymnotiform electric fishes: relation to hypoxia tolerance

Ran Tian (2449612)
Mauricio Losilla (3745013)
Ying Lu (66401)
Guang Yang (154978)
Harold Zakon (3745011)

February 2017

List of Species Used in this Study. Table S2. Statistics for amplified genes for each species. Table...

Additional file 2: of RNA-Seq in Mytilus galloprovincialis: comparative transcriptomics and expression profiles among different tissues

Rebeca Moreira (170749)
Patricia Pereiro (164424)
Carlos Canchaya (255570)
David Posada (19469)
Antonio Figueras (82634)
Beatriz Novoa (82631)

September 2015

Figure representing the number of transcripts obtained after the assembly of increasing number of ma...

Additional file 6: Table S4. of De novo transcriptome assembly, annotation and comparison of four ecological and evolutionary model salmonid fish species

Madeleine Carruthers (4745466)
Andrey Yurchenko (3460652)
Julian Augley (4745472)
Colin Adams (4745469)
Pawel Herzyk (4373)
Kathryn Elmer (3525650)

January 2018

Number and proportion of gene ontology annotations assigned to each speciesâ transcriptome. (PDF 2...

Additional file 3: Figure S2. of De novo transcriptome assembly, annotation and comparison of four ecological and evolutionary model salmonid fish species

Madeleine Carruthers (4745466)
Andrey Yurchenko (3460652)
Julian Augley (4745472)
Colin Adams (4745469)
Pawel Herzyk (4373)
Kathryn Elmer (3525650)

January 2018

Comparison of orthogroup size distribution between the current de novo assembly for Atlantic salmon,...

Additional file 2: of RNA-Seq analysis of differentially expressed genes relevant to innate and adaptive immunity in cecropin P1 transgenic rainbow trout (Oncorhynchus mykiss)

Yueh-Chiang Han (5874644)
Chun-Mean Lin (5874647)
Thomas Chen (247817)

October 2018

Singular enrichment analyses among three tissues, grouped by both GOSlim biological process and KEGG...

Additional file 2: Table S2. of Selection on different genes with equivalent functions: the convergence story told by Hox genes along the evolution of aquatic mammalian lineages

Mariana Nery (3429554)
Brunno Borges (3429551)
Aline Dragalzew (3429557)
Tiana Kohlsdorf (120086)

May 2016

Hox clusters size of those mammals with sequenced genomes included in our study. (DOCX 114 kb

Additional file 2: of Time matters! Developmental shift in gene expression between the head and the trunk region of the cichlid fish Astatotilapia burtoni

Athimed El Taher (3331803)
Nicolás Lichilín (6206306)
Walter Salzburger (15544)
Astrid Böhne (3408194)

January 2019

Table S1. Sequencing data and processing. Table S2. Statistics for the improved genome annotation. T...

Additional file 1: Table S1. of Patterns of divergence in fish species separated by the Isthmus of Panama

Christine Thacker (4015844)

May 2017

Sequences used for phylogenetic analysis of Eleotridae; GenBank accession numbers are listed for eac...

Additional file 1: Table S1. of Heterogeneous natural selection on oxidative phosphorylation genes among fishes with extreme high and low aerobic performance

Feifei Zhang (105135)
Richard Broughton (3587444)

August 2015

Species list with mitochondrial genome accession number from NCBI. Table S2. PCR primers used for nu...

Additional file 1: of Evolutionary divergence of 3â UTRs in cichlid fishes

Peiwen Xiong (5258015)
C. Hulsey (5338370)
Axel Meyer (15546)
Paolo Franchini (433788)

June 2018

Table S1. Genomic and transcriptomic data of the nine teleost fish species included in this study. (...

Additional file 1: of Nutraceutical values of fish demand their ecological genetic studies: a short review

Biswaranjan Paital (4877383)

February 2018

Figure S1. Literature in PubMed about ecogenomics, climate change, and conservation of animals espec...

The aquatic animals’ transcriptome resource for comparative functional analysis

Chih-Hung Chou
Hsi-Yuan Huang
Wei-Chih Huang
Sheng-Da Hsu
Chung-Der Hsiao
Chia-Yu Liu
Yu-Hung Chen
Yu-Chen Liu
Wei-Yun Huang
Meng-Lin Lee
Yi-Chang Chen
Hsien-Da Huang

May 2018

Abstract Background Aquatic animals have great economic and ecological importance. Among them, non-m...

Additional file 1: of RNA-Seq analysis of differentially expressed genes relevant to innate and adaptive immunity in cecropin P1 transgenic rainbow trout (Oncorhynchus mykiss)

Yueh-Chiang Han (5874644)
Chun-Mean Lin (5874647)
Thomas Chen (247817)

October 2018

Supplemental figures for pie charts of qualities of clean reads and results of sequencing saturation...

Additional file 1: of RNA-Seq in Mytilus galloprovincialis: comparative transcriptomics and expression profiles among different tissues

Rebeca Moreira (170749)
Patricia Pereiro (164424)
Carlos Canchaya (255570)
David Posada (19469)
Antonio Figueras (82634)
Beatriz Novoa (82631)

September 2015

Table listing Mytilus galloprovincialis transcripts, including the sequence, length, RPKM, descripti...

Additional file 1: of De novo transcriptome assembly and positive selection analysis of an individual deep-sea fish

Yi Lan (3356099)
Jin Sun (117866)
Ting Xu (215531)
Chong Chen (360710)
Renmao Tian (3244935)
Jian-Wen Qiu (416567)
Pei-Yuan Qian (124761)

May 2018

Table S1. Codon usage among Aldrovandia affinis, Astyanax mexicanus, Gadus morhua and Xiphophorus ma...

Additional file 1: Table S1. of Molecular evolution of globin genes in Gymnotiform electric fishes: relation to hypoxia tolerance

Ran Tian (2449612)
Mauricio Losilla (3745013)
Ying Lu (66401)
Guang Yang (154978)
Harold Zakon (3745011)

February 2017

List of Species Used in this Study. Table S2. Statistics for amplified genes for each species. Table...

Additional file 2: of RNA-Seq in Mytilus galloprovincialis: comparative transcriptomics and expression profiles among different tissues

Rebeca Moreira (170749)
Patricia Pereiro (164424)
Carlos Canchaya (255570)
David Posada (19469)
Antonio Figueras (82634)
Beatriz Novoa (82631)

September 2015

Figure representing the number of transcripts obtained after the assembly of increasing number of ma...

Additional file 6: Table S4. of De novo transcriptome assembly, annotation and comparison of four ecological and evolutionary model salmonid fish species

Madeleine Carruthers (4745466)
Andrey Yurchenko (3460652)
Julian Augley (4745472)
Colin Adams (4745469)
Pawel Herzyk (4373)
Kathryn Elmer (3525650)

January 2018

Number and proportion of gene ontology annotations assigned to each speciesâ transcriptome. (PDF 2...

Additional file 3: Figure S2. of De novo transcriptome assembly, annotation and comparison of four ecological and evolutionary model salmonid fish species

Madeleine Carruthers (4745466)
Andrey Yurchenko (3460652)
Julian Augley (4745472)
Colin Adams (4745469)
Pawel Herzyk (4373)
Kathryn Elmer (3525650)

January 2018

Comparison of orthogroup size distribution between the current de novo assembly for Atlantic salmon,...

Additional file 2: of RNA-Seq analysis of differentially expressed genes relevant to innate and adaptive immunity in cecropin P1 transgenic rainbow trout (Oncorhynchus mykiss)

Yueh-Chiang Han (5874644)
Chun-Mean Lin (5874647)
Thomas Chen (247817)

October 2018

Singular enrichment analyses among three tissues, grouped by both GOSlim biological process and KEGG...

Additional file 2: Table S2. of Selection on different genes with equivalent functions: the convergence story told by Hox genes along the evolution of aquatic mammalian lineages

Mariana Nery (3429554)
Brunno Borges (3429551)
Aline Dragalzew (3429557)
Tiana Kohlsdorf (120086)

May 2016

Hox clusters size of those mammals with sequenced genomes included in our study. (DOCX 114 kb

Additional file 2: of Time matters! Developmental shift in gene expression between the head and the trunk region of the cichlid fish Astatotilapia burtoni

Athimed El Taher (3331803)
Nicolás Lichilín (6206306)
Walter Salzburger (15544)
Astrid Böhne (3408194)

January 2019

Table S1. Sequencing data and processing. Table S2. Statistics for the improved genome annotation. T...

Additional file 1: Table S1. of Patterns of divergence in fish species separated by the Isthmus of Panama

Christine Thacker (4015844)

May 2017

Sequences used for phylogenetic analysis of Eleotridae; GenBank accession numbers are listed for eac...

Additional file 1: Table S1. of Heterogeneous natural selection on oxidative phosphorylation genes among fishes with extreme high and low aerobic performance

Feifei Zhang (105135)
Richard Broughton (3587444)

August 2015

Species list with mitochondrial genome accession number from NCBI. Table S2. PCR primers used for nu...

Additional file 1: of Evolutionary divergence of 3â UTRs in cichlid fishes

Peiwen Xiong (5258015)
C. Hulsey (5338370)
Axel Meyer (15546)
Paolo Franchini (433788)

June 2018

Table S1. Genomic and transcriptomic data of the nine teleost fish species included in this study. (...

Additional file 1: of Nutraceutical values of fish demand their ecological genetic studies: a short review

Biswaranjan Paital (4877383)

February 2018

Figure S1. Literature in PubMed about ecogenomics, climate change, and conservation of animals espec...

Additional file 1: Figure S1. of The aquatic animalsâ transcriptome resource for comparative functional analysis

Abstract

Extracted data

Additional file 1: Figure S1. of The aquatic animalsâ transcriptome resource for comparative functional analysis

Abstract

Extracted data

Related items

Related items

Additional file 1: Figure S1. of The aquatic animalsâ transcriptome resource for comparative functional analysis

Abstract

Extracted data

Additional file 1: Figure S1. of The aquatic animalsâ transcriptome resource for comparative functional analysis

Abstract

Extracted data

Related items

Related items

Additional file 1: Figure S1. of The aquatic animalsâ transcriptome resource for comparative functional analysis

Additional file 1: Figure S1. of The aquatic animalsâ transcriptome resource for comparative functional analysis