Species list with mitochondrial genome accession number from NCBI. Table S2. PCR primers used for nuclear markers used in this study. Table S3. GenBank accession number of nuclear gene (rag1, rag2, tmo4c4, zic1, myh6, and btbd7) sequences of studied species. Figure S1. Phylogeny of six fish groups based on Bayesian and maximum likelihood methods. Figure S2. Summary of selection on all mitochondrial genes. Table S4. Number of amino acid sites showing positive selection signals in each mitochondrial gene on relevant branches. Table S5. Positively selected amino acid sites for each gene on various branches. (DOCX 351 kb
The PCR Gene-specific degenerate primers. Gene-specific degenerate primers designed based on the ali...
Base composition of mitochondrial coding-genes located in the H strand of all cyprinodontiforms comp...
Maximum likelihood analysis of all protein-coding genes without the 3rd codon position. a) ATPase6; ...
List of Species Used in this Study. Table S2. Statistics for amplified genes for each species. Table...
List of species examined in this study with DDBJ/EMBL/GenBank accession numbers. (XLS 83Â kb
Supplementary Figure 1: Phylogeny of Anguilliformes used for the detection of positive selection. De...
Aligned nucleotide sequences of the conserved sequence blocks-D and -I in the control region (CR) in...
Figure S1. Multiple sequence alignment of myoglobin genes in the genomes of Clarias batrachus, Danio...
Start codons in 13 protein-coding genes in the mt genomes of 250 fishes. (XLSX 64Â kb
Sequences used for phylogenetic analysis of Eleotridae; GenBank accession numbers are listed for eac...
Table S1. Summary of Miseq and Hiseq reads of striped catfish (Pangasianodon hypophthalmus) genome. ...
Maximum likelihood analysis of all protein-coding genes. a) ATPase6; b) ATPase8; c) COI; d) COII; e)...
Percentage of the G+C content considering the 12 protein-coding genes located in the H strand. In gr...
Heteroplasmic sites identified on the mitochondrial genomes of Loricarioidei catfishes. This spreads...
Table S1. Genbank accession numbers and locality information used to generated the time calibrated p...
The PCR Gene-specific degenerate primers. Gene-specific degenerate primers designed based on the ali...
Base composition of mitochondrial coding-genes located in the H strand of all cyprinodontiforms comp...
Maximum likelihood analysis of all protein-coding genes without the 3rd codon position. a) ATPase6; ...
List of Species Used in this Study. Table S2. Statistics for amplified genes for each species. Table...
List of species examined in this study with DDBJ/EMBL/GenBank accession numbers. (XLS 83Â kb
Supplementary Figure 1: Phylogeny of Anguilliformes used for the detection of positive selection. De...
Aligned nucleotide sequences of the conserved sequence blocks-D and -I in the control region (CR) in...
Figure S1. Multiple sequence alignment of myoglobin genes in the genomes of Clarias batrachus, Danio...
Start codons in 13 protein-coding genes in the mt genomes of 250 fishes. (XLSX 64Â kb
Sequences used for phylogenetic analysis of Eleotridae; GenBank accession numbers are listed for eac...
Table S1. Summary of Miseq and Hiseq reads of striped catfish (Pangasianodon hypophthalmus) genome. ...
Maximum likelihood analysis of all protein-coding genes. a) ATPase6; b) ATPase8; c) COI; d) COII; e)...
Percentage of the G+C content considering the 12 protein-coding genes located in the H strand. In gr...
Heteroplasmic sites identified on the mitochondrial genomes of Loricarioidei catfishes. This spreads...
Table S1. Genbank accession numbers and locality information used to generated the time calibrated p...
The PCR Gene-specific degenerate primers. Gene-specific degenerate primers designed based on the ali...
Base composition of mitochondrial coding-genes located in the H strand of all cyprinodontiforms comp...
Maximum likelihood analysis of all protein-coding genes without the 3rd codon position. a) ATPase6; ...