Additional file 6: of Analysis of the canid Y-chromosome phylogeny using short-read sequencing data reveals the presence of distinct haplogroups among Neolithic European dogs

Figure S3: Individual dog and wolf haplogroup topologies from RAxML tree A. HG1–3, B. HG6 C. HG23-HG8, D. HG27, E. HG9, F. Asian Wolves. Bootstrap support is indicated above branches. The names of wolves and dogs are colored in red and black, respectively. The placement of the three ancient dogs, CTC, HXH, and NGD are indicated as triangles above the most exterior node or leaf where diagnostic mutations indicated their membership. Most bootstrap values from HG1–3 are not shown due to space limitations. (PDF 334 kb