Additional file 4: Table S1. Genes in Group I-IV; List of genes with number of GATC fragments within the presumptive regulatory region (2.5 kb upstream to 1.5 kb downstream of the transcriptional start sites (TSS)) displaying transitions between Pc-binding states (gain, loss or no-change transition between enriched, intermediate and depleted HMM states) in scrib1 if compared to WT profiles, and changes in gene expression levels of the respective gene in scrib1 to whose TSS the taGATC fragments had been mapped to. Group I (RNA – up regulated; Pc binding – gain); group II (RNA – down regulated; Pc binding – gain); group III (RNA – up regulated; Pc binding – loss); group IV (RNA – down regulated; Pc binding – loss); m1 (RNA – down regulated; P...
Additional file 9: Fig. 7. Binding of Can, Comr, and Mip40 to model genes referenced in earlier repo...
Additional file 3: Fig. 3. DamID of Comr in mip40 mutants. Comr is unable to bind the chromosomes in...
Figure S2. Quantification of CG42724 steady-state mRNA levels by RT-QMPSF. (A) Schematic representat...
Additional file 5: Table S2 i-cisTarget Analysis of group II and III genes; List of regulatory eleme...
Additional file 3: SF3. WIG file containing the results of the three-state HMM analysis of scrib1 wi...
Additional file 9. Not normalised read counts per GATC fragment for all sequenced samples mapped on...
Additional file 6: SF4 WIG file containing the results of the three-state HMM analysis of wild type ...
Additional file 2: SF2. Â WIG file containing the results of the three-state HMM analysis of wild ty...
Additional file 8: Fig. 6. DamID signal at the TSSs of genes regulated by Comr, Can, and Mip40. Usin...
Additional file 1: Fig. 1. Can, Mip40, Comr, and CG9879 tend to co-localize in the genome. A Can pea...
Additional file 7: SF1 Script developed by A. Ivankin used to perform the three-state HMM analysis b...
Additional file 6: Fig. 5. Averaged DamID profiles of Can, Comr, and Mip40 at the TSS of genes. The ...
Additional file 22: Fig. 18. Example of Can DamID data. Red profile—raw reads from Dam-Can sample. B...
Abstract Background Tracking dynamic protein–chromatin interactions in vivo is key to unravel transc...
Additional file 13: Fig. 10. Averaged DamID profile of CG9879 at the TSS of genes. The genes having ...
Additional file 9: Fig. 7. Binding of Can, Comr, and Mip40 to model genes referenced in earlier repo...
Additional file 3: Fig. 3. DamID of Comr in mip40 mutants. Comr is unable to bind the chromosomes in...
Figure S2. Quantification of CG42724 steady-state mRNA levels by RT-QMPSF. (A) Schematic representat...
Additional file 5: Table S2 i-cisTarget Analysis of group II and III genes; List of regulatory eleme...
Additional file 3: SF3. WIG file containing the results of the three-state HMM analysis of scrib1 wi...
Additional file 9. Not normalised read counts per GATC fragment for all sequenced samples mapped on...
Additional file 6: SF4 WIG file containing the results of the three-state HMM analysis of wild type ...
Additional file 2: SF2. Â WIG file containing the results of the three-state HMM analysis of wild ty...
Additional file 8: Fig. 6. DamID signal at the TSSs of genes regulated by Comr, Can, and Mip40. Usin...
Additional file 1: Fig. 1. Can, Mip40, Comr, and CG9879 tend to co-localize in the genome. A Can pea...
Additional file 7: SF1 Script developed by A. Ivankin used to perform the three-state HMM analysis b...
Additional file 6: Fig. 5. Averaged DamID profiles of Can, Comr, and Mip40 at the TSS of genes. The ...
Additional file 22: Fig. 18. Example of Can DamID data. Red profile—raw reads from Dam-Can sample. B...
Abstract Background Tracking dynamic protein–chromatin interactions in vivo is key to unravel transc...
Additional file 13: Fig. 10. Averaged DamID profile of CG9879 at the TSS of genes. The genes having ...
Additional file 9: Fig. 7. Binding of Can, Comr, and Mip40 to model genes referenced in earlier repo...
Additional file 3: Fig. 3. DamID of Comr in mip40 mutants. Comr is unable to bind the chromosomes in...
Figure S2. Quantification of CG42724 steady-state mRNA levels by RT-QMPSF. (A) Schematic representat...