Additional file 7: SF1 Script developed by A. Ivankin used to perform the three-state HMM analysis based on the previously published BioHMM algorithm (Marioni et al. [66])
Additional file 13: Fig. 10. Averaged DamID profile of CG9879 at the TSS of genes. The genes having ...
Additional file 8: Fig. 6. DamID signal at the TSSs of genes regulated by Comr, Can, and Mip40. Usin...
Additional file 18: Fig. 14. Coincidence of peaks of Mip130, Comr, and Mip40. Euler diagram represen...
Additional file 3: SF3. WIG file containing the results of the three-state HMM analysis of scrib1 wi...
Additional file 2: SF2. Â WIG file containing the results of the three-state HMM analysis of wild ty...
Additional file 6: SF4 WIG file containing the results of the three-state HMM analysis of wild type ...
Additional file 9. Not normalised read counts per GATC fragment for all sequenced samples mapped on...
Additional file 4: Table S1. Genes in Group I-IV; List of genes with number of GATC fragments within...
Additional file 5: Table S2 i-cisTarget Analysis of group II and III genes; List of regulatory eleme...
Abstract Background Tracking dynamic protein–chromatin interactions in vivo is key to unravel transc...
Additional file 22: Fig. 18. Example of Can DamID data. Red profile—raw reads from Dam-Can sample. B...
Additional file 19: Fig. 15. Motif analysis in shared peaks of Mip40 and Mip130. Top three motifs fo...
Additional file 16: Fig. 12. Overlap of Mip40 peak sets in bam, aly, and can mutants. Euler diagram ...
Additional file 3: Fig. 3. DamID of Comr in mip40 mutants. Comr is unable to bind the chromosomes in...
Additional file 6: Fig. 5. Averaged DamID profiles of Can, Comr, and Mip40 at the TSS of genes. The ...
Additional file 13: Fig. 10. Averaged DamID profile of CG9879 at the TSS of genes. The genes having ...
Additional file 8: Fig. 6. DamID signal at the TSSs of genes regulated by Comr, Can, and Mip40. Usin...
Additional file 18: Fig. 14. Coincidence of peaks of Mip130, Comr, and Mip40. Euler diagram represen...
Additional file 3: SF3. WIG file containing the results of the three-state HMM analysis of scrib1 wi...
Additional file 2: SF2. Â WIG file containing the results of the three-state HMM analysis of wild ty...
Additional file 6: SF4 WIG file containing the results of the three-state HMM analysis of wild type ...
Additional file 9. Not normalised read counts per GATC fragment for all sequenced samples mapped on...
Additional file 4: Table S1. Genes in Group I-IV; List of genes with number of GATC fragments within...
Additional file 5: Table S2 i-cisTarget Analysis of group II and III genes; List of regulatory eleme...
Abstract Background Tracking dynamic protein–chromatin interactions in vivo is key to unravel transc...
Additional file 22: Fig. 18. Example of Can DamID data. Red profile—raw reads from Dam-Can sample. B...
Additional file 19: Fig. 15. Motif analysis in shared peaks of Mip40 and Mip130. Top three motifs fo...
Additional file 16: Fig. 12. Overlap of Mip40 peak sets in bam, aly, and can mutants. Euler diagram ...
Additional file 3: Fig. 3. DamID of Comr in mip40 mutants. Comr is unable to bind the chromosomes in...
Additional file 6: Fig. 5. Averaged DamID profiles of Can, Comr, and Mip40 at the TSS of genes. The ...
Additional file 13: Fig. 10. Averaged DamID profile of CG9879 at the TSS of genes. The genes having ...
Additional file 8: Fig. 6. DamID signal at the TSSs of genes regulated by Comr, Can, and Mip40. Usin...
Additional file 18: Fig. 14. Coincidence of peaks of Mip130, Comr, and Mip40. Euler diagram represen...