Additional file 7: of Asymmetric expression patterns reveal a strong maternal effect and dosage compensation in polyploid hybrid fish

Additional file 5: Table S5. of Parental investment matters for maternal and offspring immune defense in the mouthbrooding cichlid Astatotilapia burtoni

Isabel Keller (360224)
Walter Salzburger (15544)
Olivia Roth (333946)

December 2017

ANCOVA on candidate genes from males, reproducing and non-reproducing females: Univariate analysis f...

Additional file 7: Table S7. of Parental investment matters for maternal and offspring immune defense in the mouthbrooding cichlid Astatotilapia burtoni

Isabel Keller (360224)
Walter Salzburger (15544)
Olivia Roth (333946)

December 2017

nested ANOVA on candidate genes from mouthbred juveniles: Univariate analysis following significant ...

Additional file 4: Figure S3. of Complete depletion of primordial germ cells in an All-female fish leads to Sex-biased gene expression alteration and sterile All-male occurrence

Wei Liu (20030)
Shi-Zhu Li (392748)
Zhi Li (72309)
Yang Wang (5921)
Xi-Yin Li (3528230)
Jian-Xiang Zhong (3528227)
Xiao-Juan Zhang (549882)
Jun Zhang (48506)
Li Zhou (54356)
Jian-Fang Gui (259030)

November 2015

A digital analysis of differentially expression genes (DEGs) between the germ cell-depleted gonads a...

Additional file 3: of Asymmetric expression patterns reveal a strong maternal effect and dosage compensation in polyploid hybrid fish

Wuhui Li (3483701)
Junmei Liu (5480063)
Hui Tan (590476)
Lingling Luo (5480060)
Jialin Cui (3620009)
Jie Hu (130301)
Shi Wang (116703)
Qingfeng Liu (1574959)
Fangzhou Hu (3483695)
Chenchen Tang (3620012)
Li Ren (417022)
Conghui Yang (5480069)
Rurong Zhao (5480066)
Min Tao (143985)
Chun Zhang (29010)
Qinbo Qin (319014)
Shaojun Liu (282495)

July 2018

Expression level and annotated information of coexpressed unigenes between the parents and two types...

Additional file 4: of Asymmetric expression patterns reveal a strong maternal effect and dosage compensation in polyploid hybrid fish

Wuhui Li (3483701)
Junmei Liu (5480063)
Hui Tan (590476)
Lingling Luo (5480060)
Jialin Cui (3620009)
Jie Hu (130301)
Shi Wang (116703)
Qingfeng Liu (1574959)
Fangzhou Hu (3483695)
Chenchen Tang (3620012)
Li Ren (417022)
Conghui Yang (5480069)
Rurong Zhao (5480066)
Min Tao (143985)
Chun Zhang (29010)
Qinbo Qin (319014)
Shaojun Liu (282495)

July 2018

Annotations and GO functions of ELD genes in both types of hybrids. (XLSX 273 kb

Additional file 5: of Asymmetric expression patterns reveal a strong maternal effect and dosage compensation in polyploid hybrid fish

Wuhui Li (3483701)
Junmei Liu (5480063)
Hui Tan (590476)
Lingling Luo (5480060)
Jialin Cui (3620009)
Jie Hu (130301)
Shi Wang (116703)
Qingfeng Liu (1574959)
Fangzhou Hu (3483695)
Chenchen Tang (3620012)
Li Ren (417022)
Conghui Yang (5480069)
Rurong Zhao (5480066)
Min Tao (143985)
Chun Zhang (29010)
Qinbo Qin (319014)
Shaojun Liu (282495)

July 2018

Several growth-related genes showed BSB-ELD in the two types of hybrids. (DOCX 15 kb

Additional file 1: of Asymmetric expression patterns reveal a strong maternal effect and dosage compensation in polyploid hybrid fish

Wuhui Li (3483701)
Junmei Liu (5480063)
Hui Tan (590476)
Lingling Luo (5480060)
Jialin Cui (3620009)
Jie Hu (130301)
Shi Wang (116703)
Qingfeng Liu (1574959)
Fangzhou Hu (3483695)
Chenchen Tang (3620012)
Li Ren (417022)
Conghui Yang (5480069)
Rurong Zhao (5480066)
Min Tao (143985)
Chun Zhang (29010)
Qinbo Qin (319014)
Shaojun Liu (282495)

July 2018

Table S1. Summary of the annotated information of the testis transcriptome. Table S2. Bases counts d...

Additional file 7: of Determination of dosage compensation and comparison of gene expression in a triploid hybrid fish

Li Ren (417022)
Chenchen Tang (3620012)
Wuhui Li (3483701)
Jialin Cui (3620009)
Xingjun Tan (3620006)
Yafeng Xiong (3620003)
Jie Chen (5892)
Jun Wang (5906)
Jun Xiao (179459)
Yi Zhou (2723)
Jing Wang (1228470)
Min Tao (143985)
Chun Zhang (29010)
Shaojun Liu (282495)

January 2017

Basic information of the categories of âNo changeâ in growth genes as comparison of the triploid...

Additional file 6: of Homoeolog expression bias in allopolyploid oleaginous marine diatom Fistulifera solaris

Tatsuhiro Nomaguchi (5176967)
Yoshiaki Maeda (1721908)
Tomoko Yoshino (295781)
Toru Asahi (1964932)
Leila Tirichine (3467390)
Chris Bowler (6076)
Tsuyoshi Tanaka (14084)

May 2018

Figure S5. Homoeolog expression bias in highly expressing genes. (A) Box plot showing RPKM values of...

Asymmetric expression patterns reveal a strong maternal effect and dosage compensation in polyploid hybrid fish

Wuhui Li
Junmei Liu
Hui Tan
Lingling Luo
Jialin Cui
Jie Hu
Shi Wang
Qingfeng Liu
Fangzhou Hu
Chenchen Tang
Li Ren
Conghui Yang
Rurong Zhao
Min Tao
Chun Zhang
Qinbo Qin
Shaojun Liu

July 2018

Abstract Background Hybridization and polyploidization are regarded as the major driving forces in p...

Additional file 9: of Homoeolog expression bias in allopolyploid oleaginous marine diatom Fistulifera solaris

Tatsuhiro Nomaguchi (5176967)
Yoshiaki Maeda (1721908)
Tomoko Yoshino (295781)
Toru Asahi (1964932)
Leila Tirichine (3467390)
Chris Bowler (6076)
Tsuyoshi Tanaka (14084)

May 2018

Figure S8. Range of homoeolog expression bias in metabolic pathways. Box plot of log2 showing the ex...

Additional file 9: of Determination of dosage compensation and comparison of gene expression in a triploid hybrid fish

Li Ren (417022)
Chenchen Tang (3620012)
Wuhui Li (3483701)
Jialin Cui (3620009)
Xingjun Tan (3620006)
Yafeng Xiong (3620003)
Jie Chen (5892)
Jun Wang (5906)
Jun Xiao (179459)
Yi Zhou (2723)
Jing Wang (1228470)
Min Tao (143985)
Chun Zhang (29010)
Shaojun Liu (282495)

January 2017

(Color online) Symmetric heatmap of attribute correlations among nine individuals. Blue (red) indica...

Additional file 7: of Homoeolog expression bias in allopolyploid oleaginous marine diatom Fistulifera solaris

Tatsuhiro Nomaguchi (5176967)
Yoshiaki Maeda (1721908)
Tomoko Yoshino (295781)
Toru Asahi (1964932)
Leila Tirichine (3467390)
Chris Bowler (6076)
Tsuyoshi Tanaka (14084)

May 2018

Figure S6. GO terms of consistently biased homoeologous genes. Figure shows the frequency of GO term...

Additional file 1: of Determination of dosage compensation and comparison of gene expression in a triploid hybrid fish

Li Ren (417022)
Chenchen Tang (3620012)
Wuhui Li (3483701)
Jialin Cui (3620009)
Xingjun Tan (3620006)
Yafeng Xiong (3620003)
Jie Chen (5892)
Jun Wang (5906)
Jun Xiao (179459)
Yi Zhou (2723)
Jing Wang (1228470)
Min Tao (143985)
Chun Zhang (29010)
Shaojun Liu (282495)

January 2017

Summary information of assembled sequences blasted against the five databases. (A). Contig distribut...

Determination of dosage compensation and comparison of gene expression in a triploid hybrid fish

Ren, Li
Tang, Chenchen
Li, Wuhui
Cui, Jialin
Tan, Xingjun
Xiong, Yafeng
Chen, Jie
Wang, Jun
Xiao, Jun
Zhou, Yi
Wang, Jing
Tao, Min
Zhang, Chun
Liu, Shaojun

January 2017

Abstract Background Polyploidy...

Additional file 5: Table S5. of Parental investment matters for maternal and offspring immune defense in the mouthbrooding cichlid Astatotilapia burtoni

Isabel Keller (360224)
Walter Salzburger (15544)
Olivia Roth (333946)

December 2017

ANCOVA on candidate genes from males, reproducing and non-reproducing females: Univariate analysis f...

Additional file 7: Table S7. of Parental investment matters for maternal and offspring immune defense in the mouthbrooding cichlid Astatotilapia burtoni

Isabel Keller (360224)
Walter Salzburger (15544)
Olivia Roth (333946)

December 2017

nested ANOVA on candidate genes from mouthbred juveniles: Univariate analysis following significant ...

Additional file 4: Figure S3. of Complete depletion of primordial germ cells in an All-female fish leads to Sex-biased gene expression alteration and sterile All-male occurrence

Wei Liu (20030)
Shi-Zhu Li (392748)
Zhi Li (72309)
Yang Wang (5921)
Xi-Yin Li (3528230)
Jian-Xiang Zhong (3528227)
Xiao-Juan Zhang (549882)
Jun Zhang (48506)
Li Zhou (54356)
Jian-Fang Gui (259030)

November 2015

A digital analysis of differentially expression genes (DEGs) between the germ cell-depleted gonads a...

Additional file 3: of Asymmetric expression patterns reveal a strong maternal effect and dosage compensation in polyploid hybrid fish

Wuhui Li (3483701)
Junmei Liu (5480063)
Hui Tan (590476)
Lingling Luo (5480060)
Jialin Cui (3620009)
Jie Hu (130301)
Shi Wang (116703)
Qingfeng Liu (1574959)
Fangzhou Hu (3483695)
Chenchen Tang (3620012)
Li Ren (417022)
Conghui Yang (5480069)
Rurong Zhao (5480066)
Min Tao (143985)
Chun Zhang (29010)
Qinbo Qin (319014)
Shaojun Liu (282495)

July 2018

Expression level and annotated information of coexpressed unigenes between the parents and two types...

Additional file 4: of Asymmetric expression patterns reveal a strong maternal effect and dosage compensation in polyploid hybrid fish

Wuhui Li (3483701)
Junmei Liu (5480063)
Hui Tan (590476)
Lingling Luo (5480060)
Jialin Cui (3620009)
Jie Hu (130301)
Shi Wang (116703)
Qingfeng Liu (1574959)
Fangzhou Hu (3483695)
Chenchen Tang (3620012)
Li Ren (417022)
Conghui Yang (5480069)
Rurong Zhao (5480066)
Min Tao (143985)
Chun Zhang (29010)
Qinbo Qin (319014)
Shaojun Liu (282495)

July 2018

Annotations and GO functions of ELD genes in both types of hybrids. (XLSX 273 kb

Additional file 5: of Asymmetric expression patterns reveal a strong maternal effect and dosage compensation in polyploid hybrid fish

Wuhui Li (3483701)
Junmei Liu (5480063)
Hui Tan (590476)
Lingling Luo (5480060)
Jialin Cui (3620009)
Jie Hu (130301)
Shi Wang (116703)
Qingfeng Liu (1574959)
Fangzhou Hu (3483695)
Chenchen Tang (3620012)
Li Ren (417022)
Conghui Yang (5480069)
Rurong Zhao (5480066)
Min Tao (143985)
Chun Zhang (29010)
Qinbo Qin (319014)
Shaojun Liu (282495)

July 2018

Several growth-related genes showed BSB-ELD in the two types of hybrids. (DOCX 15 kb

Additional file 1: of Asymmetric expression patterns reveal a strong maternal effect and dosage compensation in polyploid hybrid fish

Wuhui Li (3483701)
Junmei Liu (5480063)
Hui Tan (590476)
Lingling Luo (5480060)
Jialin Cui (3620009)
Jie Hu (130301)
Shi Wang (116703)
Qingfeng Liu (1574959)
Fangzhou Hu (3483695)
Chenchen Tang (3620012)
Li Ren (417022)
Conghui Yang (5480069)
Rurong Zhao (5480066)
Min Tao (143985)
Chun Zhang (29010)
Qinbo Qin (319014)
Shaojun Liu (282495)

July 2018

Table S1. Summary of the annotated information of the testis transcriptome. Table S2. Bases counts d...

Additional file 7: of Determination of dosage compensation and comparison of gene expression in a triploid hybrid fish

Li Ren (417022)
Chenchen Tang (3620012)
Wuhui Li (3483701)
Jialin Cui (3620009)
Xingjun Tan (3620006)
Yafeng Xiong (3620003)
Jie Chen (5892)
Jun Wang (5906)
Jun Xiao (179459)
Yi Zhou (2723)
Jing Wang (1228470)
Min Tao (143985)
Chun Zhang (29010)
Shaojun Liu (282495)

January 2017

Basic information of the categories of âNo changeâ in growth genes as comparison of the triploid...

Additional file 6: of Homoeolog expression bias in allopolyploid oleaginous marine diatom Fistulifera solaris

Tatsuhiro Nomaguchi (5176967)
Yoshiaki Maeda (1721908)
Tomoko Yoshino (295781)
Toru Asahi (1964932)
Leila Tirichine (3467390)
Chris Bowler (6076)
Tsuyoshi Tanaka (14084)

May 2018

Figure S5. Homoeolog expression bias in highly expressing genes. (A) Box plot showing RPKM values of...

Asymmetric expression patterns reveal a strong maternal effect and dosage compensation in polyploid hybrid fish

Wuhui Li
Junmei Liu
Hui Tan
Lingling Luo
Jialin Cui
Jie Hu
Shi Wang
Qingfeng Liu
Fangzhou Hu
Chenchen Tang
Li Ren
Conghui Yang
Rurong Zhao
Min Tao
Chun Zhang
Qinbo Qin
Shaojun Liu

July 2018

Abstract Background Hybridization and polyploidization are regarded as the major driving forces in p...

Additional file 9: of Homoeolog expression bias in allopolyploid oleaginous marine diatom Fistulifera solaris

Tatsuhiro Nomaguchi (5176967)
Yoshiaki Maeda (1721908)
Tomoko Yoshino (295781)
Toru Asahi (1964932)
Leila Tirichine (3467390)
Chris Bowler (6076)
Tsuyoshi Tanaka (14084)

May 2018

Figure S8. Range of homoeolog expression bias in metabolic pathways. Box plot of log2 showing the ex...

Additional file 9: of Determination of dosage compensation and comparison of gene expression in a triploid hybrid fish

Li Ren (417022)
Chenchen Tang (3620012)
Wuhui Li (3483701)
Jialin Cui (3620009)
Xingjun Tan (3620006)
Yafeng Xiong (3620003)
Jie Chen (5892)
Jun Wang (5906)
Jun Xiao (179459)
Yi Zhou (2723)
Jing Wang (1228470)
Min Tao (143985)
Chun Zhang (29010)
Shaojun Liu (282495)

January 2017

(Color online) Symmetric heatmap of attribute correlations among nine individuals. Blue (red) indica...

Additional file 7: of Homoeolog expression bias in allopolyploid oleaginous marine diatom Fistulifera solaris

Tatsuhiro Nomaguchi (5176967)
Yoshiaki Maeda (1721908)
Tomoko Yoshino (295781)
Toru Asahi (1964932)
Leila Tirichine (3467390)
Chris Bowler (6076)
Tsuyoshi Tanaka (14084)

May 2018

Figure S6. GO terms of consistently biased homoeologous genes. Figure shows the frequency of GO term...

Additional file 1: of Determination of dosage compensation and comparison of gene expression in a triploid hybrid fish

Li Ren (417022)
Chenchen Tang (3620012)
Wuhui Li (3483701)
Jialin Cui (3620009)
Xingjun Tan (3620006)
Yafeng Xiong (3620003)
Jie Chen (5892)
Jun Wang (5906)
Jun Xiao (179459)
Yi Zhou (2723)
Jing Wang (1228470)
Min Tao (143985)
Chun Zhang (29010)
Shaojun Liu (282495)

January 2017

Summary information of assembled sequences blasted against the five databases. (A). Contig distribut...

Determination of dosage compensation and comparison of gene expression in a triploid hybrid fish

Ren, Li
Tang, Chenchen
Li, Wuhui
Cui, Jialin
Tan, Xingjun
Xiong, Yafeng
Chen, Jie
Wang, Jun
Xiao, Jun
Zhou, Yi
Wang, Jing
Tao, Min
Zhang, Chun
Liu, Shaojun

January 2017

Abstract Background Polyploidy...

Additional file 5: Table S5. of Parental investment matters for maternal and offspring immune defense in the mouthbrooding cichlid Astatotilapia burtoni

Isabel Keller (360224)
Walter Salzburger (15544)
Olivia Roth (333946)

December 2017

ANCOVA on candidate genes from males, reproducing and non-reproducing females: Univariate analysis f...

Additional file 7: Table S7. of Parental investment matters for maternal and offspring immune defense in the mouthbrooding cichlid Astatotilapia burtoni

Isabel Keller (360224)
Walter Salzburger (15544)
Olivia Roth (333946)

December 2017

nested ANOVA on candidate genes from mouthbred juveniles: Univariate analysis following significant ...

Additional file 4: Figure S3. of Complete depletion of primordial germ cells in an All-female fish leads to Sex-biased gene expression alteration and sterile All-male occurrence

Wei Liu (20030)
Shi-Zhu Li (392748)
Zhi Li (72309)
Yang Wang (5921)
Xi-Yin Li (3528230)
Jian-Xiang Zhong (3528227)
Xiao-Juan Zhang (549882)
Jun Zhang (48506)
Li Zhou (54356)
Jian-Fang Gui (259030)

November 2015

A digital analysis of differentially expression genes (DEGs) between the germ cell-depleted gonads a...

Additional file 7: of Asymmetric expression patterns reveal a strong maternal effect and dosage compensation in polyploid hybrid fish

Abstract

Extracted data

Additional file 7: of Asymmetric expression patterns reveal a strong maternal effect and dosage compensation in polyploid hybrid fish

Abstract

Extracted data

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