Additional file 7: of Determination of dosage compensation and comparison of gene expression in a triploid hybrid fish

Additional file 3: of Rapid growth accelerates telomere attrition in a transgenic fish

Angela Pauliny (352847)
Robert Devlin (3254766)
Jรถrgen Johnsson (3546776)
Donald Blomqvist (352849)

August 2015

Summary of standard curve characteristics for all telomere and beta-actin qPCR assays. On each of fi...

Additional file 5: of Early nutritional programming affects liver transcriptome in diploid and triploid Atlantic salmon, Salmo salar

L. Vera (4601566)
C. Metochis (4601575)
J. Taylor (4601572)
M. Clarkson (4601563)
K. SkjĂŚrven (4601569)
H. Migaud (4111705)
D. Tocher (4601560)

November 2017

List of genes differentially expressed according to two-way ANOVA (pÂ <Â 0.05) and affected by the i...

Additional file 7: of Cross-tissue and cross-species analysis of gene expression in skeletal muscle and electric organ of African weakly-electric fish (Teleostei; Mormyridae)

Francesco Lamanna (820731)
Frank Kirschbaum (3294675)
Isabelle Waurick (3300642)
Christoph Dieterich (41457)
Ralph Tiedemann (187244)

September 2015

Transcriptsâ length distribution of the C. tshokwe Trinity assembly. (PDF 5Â kb

Additional file 1: of Determination of dosage compensation and comparison of gene expression in a triploid hybrid fish

Li Ren (417022)
Chenchen Tang (3620012)
Wuhui Li (3483701)
Jialin Cui (3620009)
Xingjun Tan (3620006)
Yafeng Xiong (3620003)
Jie Chen (5892)
Jun Wang (5906)
Jun Xiao (179459)
Yi Zhou (2723)
Jing Wang (1228470)
Min Tao (143985)
Chun Zhang (29010)
Shaojun Liu (282495)

January 2017

Summary information of assembled sequences blasted against the five databases. (A). Contig distribut...

Additional file 2: of Determination of dosage compensation and comparison of gene expression in a triploid hybrid fish

Li Ren (417022)
Chenchen Tang (3620012)
Wuhui Li (3483701)
Jialin Cui (3620009)
Xingjun Tan (3620006)
Yafeng Xiong (3620003)
Jie Chen (5892)
Jun Wang (5906)
Jun Xiao (179459)
Yi Zhou (2723)
Jing Wang (1228470)
Min Tao (143985)
Chun Zhang (29010)
Shaojun Liu (282495)

January 2017

Gene ontology (GO) assignments for the GC, BSB and GB. GO assignments (level 2) were used to predict...

Additional file 1: of Asymmetric expression patterns reveal a strong maternal effect and dosage compensation in polyploid hybrid fish

Wuhui Li (3483701)
Junmei Liu (5480063)
Hui Tan (590476)
Lingling Luo (5480060)
Jialin Cui (3620009)
Jie Hu (130301)
Shi Wang (116703)
Qingfeng Liu (1574959)
Fangzhou Hu (3483695)
Chenchen Tang (3620012)
Li Ren (417022)
Conghui Yang (5480069)
Rurong Zhao (5480066)
Min Tao (143985)
Chun Zhang (29010)
Qinbo Qin (319014)
Shaojun Liu (282495)

July 2018

Table S1. Summary of the annotated information of the testis transcriptome. Table S2. Bases counts d...

Additional file 9: of Effect of triploidy on liver gene expression in coho salmon (Oncorhynchus kisutch) under different metabolic states

Kris Christensen (6664883)
Dionne Sakhrani (809148)
Eric Rondeau (179438)
Jeffery Richards (6664886)
Ben Koop (3260670)
Robert Devlin (3254766)

May 2019

Figure S7. Transgenic Growth Hormone Gene Expression and Growth from Previous Study. A) Figure repro...

Additional file 3: of Asymmetric expression patterns reveal a strong maternal effect and dosage compensation in polyploid hybrid fish

Wuhui Li (3483701)
Junmei Liu (5480063)
Hui Tan (590476)
Lingling Luo (5480060)
Jialin Cui (3620009)
Jie Hu (130301)
Shi Wang (116703)
Qingfeng Liu (1574959)
Fangzhou Hu (3483695)
Chenchen Tang (3620012)
Li Ren (417022)
Conghui Yang (5480069)
Rurong Zhao (5480066)
Min Tao (143985)
Chun Zhang (29010)
Qinbo Qin (319014)
Shaojun Liu (282495)

July 2018

Expression level and annotated information of coexpressed unigenes between the parents and two types...

Additional file 5: of Asymmetric expression patterns reveal a strong maternal effect and dosage compensation in polyploid hybrid fish

Wuhui Li (3483701)
Junmei Liu (5480063)
Hui Tan (590476)
Lingling Luo (5480060)
Jialin Cui (3620009)
Jie Hu (130301)
Shi Wang (116703)
Qingfeng Liu (1574959)
Fangzhou Hu (3483695)
Chenchen Tang (3620012)
Li Ren (417022)
Conghui Yang (5480069)
Rurong Zhao (5480066)
Min Tao (143985)
Chun Zhang (29010)
Qinbo Qin (319014)
Shaojun Liu (282495)

July 2018

Several growth-related genes showed BSB-ELD in the two types of hybrids. (DOCX 15 kb

Additional file 2: of Effect of triploidy on liver gene expression in coho salmon (Oncorhynchus kisutch) under different metabolic states

Kris Christensen (6664883)
Dionne Sakhrani (809148)
Eric Rondeau (179438)
Jeffery Richards (6664886)
Ben Koop (3260670)
Robert Devlin (3254766)

May 2019

Supporting Information. This is a spreadsheet file with information on RNA-seq alignments, significa...

Additional file 4: of Asymmetric expression patterns reveal a strong maternal effect and dosage compensation in polyploid hybrid fish

Wuhui Li (3483701)
Junmei Liu (5480063)
Hui Tan (590476)
Lingling Luo (5480060)
Jialin Cui (3620009)
Jie Hu (130301)
Shi Wang (116703)
Qingfeng Liu (1574959)
Fangzhou Hu (3483695)
Chenchen Tang (3620012)
Li Ren (417022)
Conghui Yang (5480069)
Rurong Zhao (5480066)
Min Tao (143985)
Chun Zhang (29010)
Qinbo Qin (319014)
Shaojun Liu (282495)

July 2018

Annotations and GO functions of ELD genes in both types of hybrids. (XLSX 273 kb

Determination of dosage compensation and comparison of gene expression in a triploid hybrid fish

Ren, Li
Tang, Chenchen
Li, Wuhui
Cui, Jialin
Tan, Xingjun
Xiong, Yafeng
Chen, Jie
Wang, Jun
Xiao, Jun
Zhou, Yi
Wang, Jing
Tao, Min
Zhang, Chun
Liu, Shaojun

January 2017

Abstract Background Polyploidy...

Additional file 9: of Determination of dosage compensation and comparison of gene expression in a triploid hybrid fish

Li Ren (417022)
Chenchen Tang (3620012)
Wuhui Li (3483701)
Jialin Cui (3620009)
Xingjun Tan (3620006)
Yafeng Xiong (3620003)
Jie Chen (5892)
Jun Wang (5906)
Jun Xiao (179459)
Yi Zhou (2723)
Jing Wang (1228470)
Min Tao (143985)
Chun Zhang (29010)
Shaojun Liu (282495)

January 2017

(Color online) Symmetric heatmap of attribute correlations among nine individuals. Blue (red) indica...

Additional file 7: of Asymmetric expression patterns reveal a strong maternal effect and dosage compensation in polyploid hybrid fish

Wuhui Li (3483701)
Junmei Liu (5480063)
Hui Tan (590476)
Lingling Luo (5480060)
Jialin Cui (3620009)
Jie Hu (130301)
Shi Wang (116703)
Qingfeng Liu (1574959)
Fangzhou Hu (3483695)
Chenchen Tang (3620012)
Li Ren (417022)
Conghui Yang (5480069)
Rurong Zhao (5480066)
Min Tao (143985)
Chun Zhang (29010)
Qinbo Qin (319014)
Shaojun Liu (282495)

July 2018

Figure S1. Effective primers for four homoeolog expression bias genes. (PNG 69 kb

Additional file 6: of Early nutritional programming affects liver transcriptome in diploid and triploid Atlantic salmon, Salmo salar

L. Vera (4601566)
C. Metochis (4601575)
J. Taylor (4601572)
M. Clarkson (4601563)
K. SkjĂŚrven (4601569)
H. Migaud (4111705)
D. Tocher (4601560)

November 2017

Pathways significantly enriched based on diet x ploidy, as indicated by two-way ANOVA (pÂ <Â 0.05). ...

Additional file 3: of Rapid growth accelerates telomere attrition in a transgenic fish

Angela Pauliny (352847)
Robert Devlin (3254766)
Jรถrgen Johnsson (3546776)
Donald Blomqvist (352849)

August 2015

Summary of standard curve characteristics for all telomere and beta-actin qPCR assays. On each of fi...

Additional file 5: of Early nutritional programming affects liver transcriptome in diploid and triploid Atlantic salmon, Salmo salar

L. Vera (4601566)
C. Metochis (4601575)
J. Taylor (4601572)
M. Clarkson (4601563)
K. SkjĂŚrven (4601569)
H. Migaud (4111705)
D. Tocher (4601560)

November 2017

List of genes differentially expressed according to two-way ANOVA (pÂ <Â 0.05) and affected by the i...

Additional file 7: of Cross-tissue and cross-species analysis of gene expression in skeletal muscle and electric organ of African weakly-electric fish (Teleostei; Mormyridae)

Francesco Lamanna (820731)
Frank Kirschbaum (3294675)
Isabelle Waurick (3300642)
Christoph Dieterich (41457)
Ralph Tiedemann (187244)

September 2015

Transcriptsâ length distribution of the C. tshokwe Trinity assembly. (PDF 5Â kb

Additional file 1: of Determination of dosage compensation and comparison of gene expression in a triploid hybrid fish

Li Ren (417022)
Chenchen Tang (3620012)
Wuhui Li (3483701)
Jialin Cui (3620009)
Xingjun Tan (3620006)
Yafeng Xiong (3620003)
Jie Chen (5892)
Jun Wang (5906)
Jun Xiao (179459)
Yi Zhou (2723)
Jing Wang (1228470)
Min Tao (143985)
Chun Zhang (29010)
Shaojun Liu (282495)

January 2017

Summary information of assembled sequences blasted against the five databases. (A). Contig distribut...

Additional file 2: of Determination of dosage compensation and comparison of gene expression in a triploid hybrid fish

Li Ren (417022)
Chenchen Tang (3620012)
Wuhui Li (3483701)
Jialin Cui (3620009)
Xingjun Tan (3620006)
Yafeng Xiong (3620003)
Jie Chen (5892)
Jun Wang (5906)
Jun Xiao (179459)
Yi Zhou (2723)
Jing Wang (1228470)
Min Tao (143985)
Chun Zhang (29010)
Shaojun Liu (282495)

January 2017

Gene ontology (GO) assignments for the GC, BSB and GB. GO assignments (level 2) were used to predict...

Additional file 1: of Asymmetric expression patterns reveal a strong maternal effect and dosage compensation in polyploid hybrid fish

Wuhui Li (3483701)
Junmei Liu (5480063)
Hui Tan (590476)
Lingling Luo (5480060)
Jialin Cui (3620009)
Jie Hu (130301)
Shi Wang (116703)
Qingfeng Liu (1574959)
Fangzhou Hu (3483695)
Chenchen Tang (3620012)
Li Ren (417022)
Conghui Yang (5480069)
Rurong Zhao (5480066)
Min Tao (143985)
Chun Zhang (29010)
Qinbo Qin (319014)
Shaojun Liu (282495)

July 2018

Table S1. Summary of the annotated information of the testis transcriptome. Table S2. Bases counts d...

Additional file 9: of Effect of triploidy on liver gene expression in coho salmon (Oncorhynchus kisutch) under different metabolic states

Kris Christensen (6664883)
Dionne Sakhrani (809148)
Eric Rondeau (179438)
Jeffery Richards (6664886)
Ben Koop (3260670)
Robert Devlin (3254766)

May 2019

Figure S7. Transgenic Growth Hormone Gene Expression and Growth from Previous Study. A) Figure repro...

Additional file 3: of Asymmetric expression patterns reveal a strong maternal effect and dosage compensation in polyploid hybrid fish

Wuhui Li (3483701)
Junmei Liu (5480063)
Hui Tan (590476)
Lingling Luo (5480060)
Jialin Cui (3620009)
Jie Hu (130301)
Shi Wang (116703)
Qingfeng Liu (1574959)
Fangzhou Hu (3483695)
Chenchen Tang (3620012)
Li Ren (417022)
Conghui Yang (5480069)
Rurong Zhao (5480066)
Min Tao (143985)
Chun Zhang (29010)
Qinbo Qin (319014)
Shaojun Liu (282495)

July 2018

Expression level and annotated information of coexpressed unigenes between the parents and two types...

Additional file 5: of Asymmetric expression patterns reveal a strong maternal effect and dosage compensation in polyploid hybrid fish

Wuhui Li (3483701)
Junmei Liu (5480063)
Hui Tan (590476)
Lingling Luo (5480060)
Jialin Cui (3620009)
Jie Hu (130301)
Shi Wang (116703)
Qingfeng Liu (1574959)
Fangzhou Hu (3483695)
Chenchen Tang (3620012)
Li Ren (417022)
Conghui Yang (5480069)
Rurong Zhao (5480066)
Min Tao (143985)
Chun Zhang (29010)
Qinbo Qin (319014)
Shaojun Liu (282495)

July 2018

Several growth-related genes showed BSB-ELD in the two types of hybrids. (DOCX 15 kb

Additional file 2: of Effect of triploidy on liver gene expression in coho salmon (Oncorhynchus kisutch) under different metabolic states

Kris Christensen (6664883)
Dionne Sakhrani (809148)
Eric Rondeau (179438)
Jeffery Richards (6664886)
Ben Koop (3260670)
Robert Devlin (3254766)

May 2019

Supporting Information. This is a spreadsheet file with information on RNA-seq alignments, significa...

Additional file 4: of Asymmetric expression patterns reveal a strong maternal effect and dosage compensation in polyploid hybrid fish

Wuhui Li (3483701)
Junmei Liu (5480063)
Hui Tan (590476)
Lingling Luo (5480060)
Jialin Cui (3620009)
Jie Hu (130301)
Shi Wang (116703)
Qingfeng Liu (1574959)
Fangzhou Hu (3483695)
Chenchen Tang (3620012)
Li Ren (417022)
Conghui Yang (5480069)
Rurong Zhao (5480066)
Min Tao (143985)
Chun Zhang (29010)
Qinbo Qin (319014)
Shaojun Liu (282495)

July 2018

Annotations and GO functions of ELD genes in both types of hybrids. (XLSX 273 kb

Determination of dosage compensation and comparison of gene expression in a triploid hybrid fish

Ren, Li
Tang, Chenchen
Li, Wuhui
Cui, Jialin
Tan, Xingjun
Xiong, Yafeng
Chen, Jie
Wang, Jun
Xiao, Jun
Zhou, Yi
Wang, Jing
Tao, Min
Zhang, Chun
Liu, Shaojun

January 2017

Abstract Background Polyploidy...

Additional file 9: of Determination of dosage compensation and comparison of gene expression in a triploid hybrid fish

Li Ren (417022)
Chenchen Tang (3620012)
Wuhui Li (3483701)
Jialin Cui (3620009)
Xingjun Tan (3620006)
Yafeng Xiong (3620003)
Jie Chen (5892)
Jun Wang (5906)
Jun Xiao (179459)
Yi Zhou (2723)
Jing Wang (1228470)
Min Tao (143985)
Chun Zhang (29010)
Shaojun Liu (282495)

January 2017

(Color online) Symmetric heatmap of attribute correlations among nine individuals. Blue (red) indica...

Additional file 7: of Asymmetric expression patterns reveal a strong maternal effect and dosage compensation in polyploid hybrid fish

Wuhui Li (3483701)
Junmei Liu (5480063)
Hui Tan (590476)
Lingling Luo (5480060)
Jialin Cui (3620009)
Jie Hu (130301)
Shi Wang (116703)
Qingfeng Liu (1574959)
Fangzhou Hu (3483695)
Chenchen Tang (3620012)
Li Ren (417022)
Conghui Yang (5480069)
Rurong Zhao (5480066)
Min Tao (143985)
Chun Zhang (29010)
Qinbo Qin (319014)
Shaojun Liu (282495)

July 2018

Figure S1. Effective primers for four homoeolog expression bias genes. (PNG 69 kb

Additional file 6: of Early nutritional programming affects liver transcriptome in diploid and triploid Atlantic salmon, Salmo salar

L. Vera (4601566)
C. Metochis (4601575)
J. Taylor (4601572)
M. Clarkson (4601563)
K. SkjĂŚrven (4601569)
H. Migaud (4111705)
D. Tocher (4601560)

November 2017

Pathways significantly enriched based on diet x ploidy, as indicated by two-way ANOVA (pÂ <Â 0.05). ...

Additional file 3: of Rapid growth accelerates telomere attrition in a transgenic fish

Angela Pauliny (352847)
Robert Devlin (3254766)
Jรถrgen Johnsson (3546776)
Donald Blomqvist (352849)

August 2015

Summary of standard curve characteristics for all telomere and beta-actin qPCR assays. On each of fi...

Additional file 5: of Early nutritional programming affects liver transcriptome in diploid and triploid Atlantic salmon, Salmo salar

L. Vera (4601566)
C. Metochis (4601575)
J. Taylor (4601572)
M. Clarkson (4601563)
K. SkjĂŚrven (4601569)
H. Migaud (4111705)
D. Tocher (4601560)

November 2017

List of genes differentially expressed according to two-way ANOVA (pÂ <Â 0.05) and affected by the i...

Additional file 7: of Cross-tissue and cross-species analysis of gene expression in skeletal muscle and electric organ of African weakly-electric fish (Teleostei; Mormyridae)

Francesco Lamanna (820731)
Frank Kirschbaum (3294675)
Isabelle Waurick (3300642)
Christoph Dieterich (41457)
Ralph Tiedemann (187244)

September 2015

Transcriptsâ length distribution of the C. tshokwe Trinity assembly. (PDF 5Â kb

Additional file 7: of Determination of dosage compensation and comparison of gene expression in a triploid hybrid fish

Abstract

Extracted data

Additional file 7: of Determination of dosage compensation and comparison of gene expression in a triploid hybrid fish

Abstract

Extracted data

Related items

Related items