Additional file 26: of Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Fig. 8 in A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae

Zheng, Jinshui
Wittouck, Stijn
Salvetti, Elisa
Franz, Charles M.A.P.
Harris, Hugh M.B.
Mattarelli, Paola
O'Toole, Paul W.
Pot, Bruno
Vandamme, Peter
Walter, Jens
Watanabe, Koichi
Wuyts, Sander
Felis, Giovanna E.
Gänzle, Michael G.
Lebeer, Sarah

April 2020

Fig. 8. Heat map depicting the cAAI values of the 38 782 pairwise comparisons of all species in the ...

Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Inglin, Raffael C.
Meile, Leo
Stevens, Marc J.A.

January 2018

Background Bacterial taxonomy aims to classify bacteria based on true evolutionary events and relie...

Additional file 8: of Comparative analysis of Faecalibacterium prausnitzii genomes shows a high level of genome plasticity and warrants separation into new species-level taxa

Cormac Fitzgerald (6088049)
Andrey Shkoporov (6088052)
Thomas Sutton (3860260)
Andrei Chaplin (6088055)
Vimalkumar Velayudhan (126780)
R. Ross (3461291)
Colin Hill (73239)

December 2018

Figure S5. Heatmap of gene orthologues differentially abundant between the two F. prausnitzii genomo...

Additional file 25: of Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Raffael Inglin (5141051)
Leo Meile (35957)
Marc Stevens (3579653)

April 2018

Pan-genome heatmap of L. rhamnosus. Heatmap clustering according to 4889 pan-genome genes from 51 La...

Additional file 27: of Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Raffael Inglin (5141051)
Leo Meile (35957)
Marc Stevens (3579653)

April 2018

Pan-genome heatmap of L. reuteri. Heatmap clustering according to 3960 pan-genome genes from 25 Lact...

Additional file 28: of Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Raffael Inglin (5141051)
Leo Meile (35957)
Marc Stevens (3579653)

April 2018

Pan-genome heatmap of L. helveticus. Heatmap clustering according to 3350 pan-genome genes from 19 L...

Additional file 5: of Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Raffael Inglin (5141051)
Leo Meile (35957)
Marc Stevens (3579653)

April 2018

Pan-genome clustering of genus Lactobacillus. Heatmap clustering according to 20,969 pan-genome gene...

Additional file 6: of Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Raffael Inglin (5141051)
Leo Meile (35957)
Marc Stevens (3579653)

April 2018

Softcore-genome clustering of genus Lactobacillus. Heatmap clustering according to 594 softcore gene...

Additional file 24: of Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Raffael Inglin (5141051)
Leo Meile (35957)
Marc Stevens (3579653)

April 2018

Pan- and core-genome evolution of L. plantarum. A Evolution of the pan-genome for L. plantarum. The ...

Additional file 21: of Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Raffael Inglin (5141051)
Leo Meile (35957)
Marc Stevens (3579653)

April 2018

Pan- and core-genome evolution of L. rhamnosus. A Evolution of the pan-genome for L. rhamnosus. Afte...

Additional file 20: of Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Raffael Inglin (5141051)
Leo Meile (35957)
Marc Stevens (3579653)

April 2018

Pan- and core-genome evolution of L. reuteri. A Evolution of the pan-genome for L. reuteri. After 20...

Additional file 11: of Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Raffael Inglin (5141051)
Leo Meile (35957)
Marc Stevens (3579653)

April 2018

TOPD/FMTS nodal distance scores and SNPs evaluation. Genes are sorted according to the nodal distanc...

Additional file 12 of Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Raffael Inglin (5141051)
Leo Meile (35957)
Marc Stevens (3579653)

April 2018

Potential HGT in Lactobacillus delbrueckii. Clade B = bulgaricus clade, clade D = diverse clade, Num...

Additional file 9: of Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Raffael Inglin (5141051)
Leo Meile (35957)
Marc Stevens (3579653)

April 2018

Reconstruction of core, softcore- and pan-genome of Lactobacillus delbrueckii species with the Brite...

Additional file 10: of Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Raffael Inglin (5141051)
Leo Meile (35957)
Marc Stevens (3579653)

April 2018

Reconstruction of core, softcore- and pan-genome of Lactobacillus delbrueckii species with the Modul...

Fig. 8 in A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae

Zheng, Jinshui
Wittouck, Stijn
Salvetti, Elisa
Franz, Charles M.A.P.
Harris, Hugh M.B.
Mattarelli, Paola
O'Toole, Paul W.
Pot, Bruno
Vandamme, Peter
Walter, Jens
Watanabe, Koichi
Wuyts, Sander
Felis, Giovanna E.
Gänzle, Michael G.
Lebeer, Sarah

April 2020

Fig. 8. Heat map depicting the cAAI values of the 38 782 pairwise comparisons of all species in the ...

Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Inglin, Raffael C.
Meile, Leo
Stevens, Marc J.A.

January 2018

Background Bacterial taxonomy aims to classify bacteria based on true evolutionary events and relie...

Additional file 8: of Comparative analysis of Faecalibacterium prausnitzii genomes shows a high level of genome plasticity and warrants separation into new species-level taxa

Cormac Fitzgerald (6088049)
Andrey Shkoporov (6088052)
Thomas Sutton (3860260)
Andrei Chaplin (6088055)
Vimalkumar Velayudhan (126780)
R. Ross (3461291)
Colin Hill (73239)

December 2018

Figure S5. Heatmap of gene orthologues differentially abundant between the two F. prausnitzii genomo...

Additional file 25: of Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Raffael Inglin (5141051)
Leo Meile (35957)
Marc Stevens (3579653)

April 2018

Pan-genome heatmap of L. rhamnosus. Heatmap clustering according to 4889 pan-genome genes from 51 La...

Additional file 27: of Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Raffael Inglin (5141051)
Leo Meile (35957)
Marc Stevens (3579653)

April 2018

Pan-genome heatmap of L. reuteri. Heatmap clustering according to 3960 pan-genome genes from 25 Lact...

Additional file 28: of Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Raffael Inglin (5141051)
Leo Meile (35957)
Marc Stevens (3579653)

April 2018

Pan-genome heatmap of L. helveticus. Heatmap clustering according to 3350 pan-genome genes from 19 L...

Additional file 5: of Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Raffael Inglin (5141051)
Leo Meile (35957)
Marc Stevens (3579653)

April 2018

Pan-genome clustering of genus Lactobacillus. Heatmap clustering according to 20,969 pan-genome gene...

Additional file 6: of Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Raffael Inglin (5141051)
Leo Meile (35957)
Marc Stevens (3579653)

April 2018

Softcore-genome clustering of genus Lactobacillus. Heatmap clustering according to 594 softcore gene...

Additional file 24: of Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Raffael Inglin (5141051)
Leo Meile (35957)
Marc Stevens (3579653)

April 2018

Pan- and core-genome evolution of L. plantarum. A Evolution of the pan-genome for L. plantarum. The ...

Additional file 21: of Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Raffael Inglin (5141051)
Leo Meile (35957)
Marc Stevens (3579653)

April 2018

Pan- and core-genome evolution of L. rhamnosus. A Evolution of the pan-genome for L. rhamnosus. Afte...

Additional file 20: of Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Raffael Inglin (5141051)
Leo Meile (35957)
Marc Stevens (3579653)

April 2018

Pan- and core-genome evolution of L. reuteri. A Evolution of the pan-genome for L. reuteri. After 20...

Additional file 11: of Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Raffael Inglin (5141051)
Leo Meile (35957)
Marc Stevens (3579653)

April 2018

TOPD/FMTS nodal distance scores and SNPs evaluation. Genes are sorted according to the nodal distanc...

Additional file 12 of Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Raffael Inglin (5141051)
Leo Meile (35957)
Marc Stevens (3579653)

April 2018

Potential HGT in Lactobacillus delbrueckii. Clade B = bulgaricus clade, clade D = diverse clade, Num...

Additional file 9: of Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Raffael Inglin (5141051)
Leo Meile (35957)
Marc Stevens (3579653)

April 2018

Reconstruction of core, softcore- and pan-genome of Lactobacillus delbrueckii species with the Brite...

Additional file 10: of Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Raffael Inglin (5141051)
Leo Meile (35957)
Marc Stevens (3579653)

April 2018

Reconstruction of core, softcore- and pan-genome of Lactobacillus delbrueckii species with the Modul...

Fig. 8 in A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae

Zheng, Jinshui
Wittouck, Stijn
Salvetti, Elisa
Franz, Charles M.A.P.
Harris, Hugh M.B.
Mattarelli, Paola
O'Toole, Paul W.
Pot, Bruno
Vandamme, Peter
Walter, Jens
Watanabe, Koichi
Wuyts, Sander
Felis, Giovanna E.
Gänzle, Michael G.
Lebeer, Sarah

April 2020

Fig. 8. Heat map depicting the cAAI values of the 38 782 pairwise comparisons of all species in the ...

Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Inglin, Raffael C.
Meile, Leo
Stevens, Marc J.A.

January 2018

Background Bacterial taxonomy aims to classify bacteria based on true evolutionary events and relie...

Additional file 8: of Comparative analysis of Faecalibacterium prausnitzii genomes shows a high level of genome plasticity and warrants separation into new species-level taxa

Cormac Fitzgerald (6088049)
Andrey Shkoporov (6088052)
Thomas Sutton (3860260)
Andrei Chaplin (6088055)
Vimalkumar Velayudhan (126780)
R. Ross (3461291)
Colin Hill (73239)

December 2018

Figure S5. Heatmap of gene orthologues differentially abundant between the two F. prausnitzii genomo...

Additional file 26: of Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Abstract

Extracted data

Additional file 26: of Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Abstract

Extracted data

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