Supplementary materials. Additional information about the IDPM database. (DOCX 39Â kb
IPC protein dataset (2,324 proteins, derived from SWISS-2DPAGE and PIP-DB after 99 % redundancy remo...
Proportion of redundant peptides in decoy databases for simulated proteogenomic search. (DOCX 14Â kb
This file contains all molybdoprotein sequences analyzed in this study. (TXT 32763 kb
An image file showing the validation tests used to check overall features and a range of individual ...
Supplementary material. Supplementary material detailing multi-domain proteins in UniProt-SwissProt ...
This file contains additional DASP methods, including the development and validation of DASP2, and s...
Table S1. List of the identification codes of the PDB files of the datasets examined in the present ...
Experiment design file for the mouse ionization/p53 dataset. This file was used in our analysis. (CS...
Supplementary methods. Descriptions on the human MS/MS data set, RNA sequencing analysis, constructi...
Supplement 1. PDB IDs of 91,223 X-ray structures downloaded from the PDB in September 2014. Suppleme...
Table S1. The list of organisms with publicly-available data on the ion channels and secondary trans...
Workflow for generating a simulated proteogenomic database for yeast. (DOCX 743Â kb
The transporter substrate dataset. The Additional file 2 contains data for compounds that were found...
Read count file for the mouse ionization/p53 dataset. This file was used in our analysis. (CSV 1513 ...
The propensity score of residues interacting with various carbohydrates. Figure S2. A web logo of AT...
IPC protein dataset (2,324 proteins, derived from SWISS-2DPAGE and PIP-DB after 99 % redundancy remo...
Proportion of redundant peptides in decoy databases for simulated proteogenomic search. (DOCX 14Â kb
This file contains all molybdoprotein sequences analyzed in this study. (TXT 32763 kb
An image file showing the validation tests used to check overall features and a range of individual ...
Supplementary material. Supplementary material detailing multi-domain proteins in UniProt-SwissProt ...
This file contains additional DASP methods, including the development and validation of DASP2, and s...
Table S1. List of the identification codes of the PDB files of the datasets examined in the present ...
Experiment design file for the mouse ionization/p53 dataset. This file was used in our analysis. (CS...
Supplementary methods. Descriptions on the human MS/MS data set, RNA sequencing analysis, constructi...
Supplement 1. PDB IDs of 91,223 X-ray structures downloaded from the PDB in September 2014. Suppleme...
Table S1. The list of organisms with publicly-available data on the ion channels and secondary trans...
Workflow for generating a simulated proteogenomic database for yeast. (DOCX 743Â kb
The transporter substrate dataset. The Additional file 2 contains data for compounds that were found...
Read count file for the mouse ionization/p53 dataset. This file was used in our analysis. (CSV 1513 ...
The propensity score of residues interacting with various carbohydrates. Figure S2. A web logo of AT...
IPC protein dataset (2,324 proteins, derived from SWISS-2DPAGE and PIP-DB after 99 % redundancy remo...
Proportion of redundant peptides in decoy databases for simulated proteogenomic search. (DOCX 14Â kb
This file contains all molybdoprotein sequences analyzed in this study. (TXT 32763 kb
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