Publication date
March 2018
DOIAbstract
Python scripts for extracting SNPs from 1-allele RAxML (phylip) files; and script for summarizing bootstrap values from RAxML 2-allele results. Additional details are commented in each script
Python scripts for extracting SNPs from 1-allele RAxML (phylip) files; and script for summarizing bootstrap values from RAxML 2-allele results. Additional details are commented in each script
Custom python_scripts used in the analysis, including mutual best hit analysis, pairwise_p_distance ...
Script associated with the bioinformatics pipeline. The first script strings the programs together (...
This python script detects those SNPs that aren't within the specific distance of the restriction en...
Python scripts for extracting SNPs from 1-allele RAxML (phylip) files; and script for summarizing bo...
Python script used for making infiles for RAxML, MrBayes, and *BEAST analyses. Input is a nexus fil...
Nucleotide alignments of individual chloroplast genes. Python scripts for removal of masked sites. D...
This zip archive includes two python scripts referenced in the associated publication. Functionality...
Python script that converts pileup-format files to allele-specific SNP count text files
python script to establish the genomic position of candidate SNPs based on the gene predictions for ...
Python script for generating randomized nucleotide datasets of different lengths for analysis in RAx...
Bash shell and python scripts used to prepare alignments for gene tree inference, phase alleles, and...
Python script that reads from bam file based on presence of alleles in text file (text file with thr...
Extracts STACKS that contain SNPs fixed between two groups, where at least a certain number of popul...
This file contains the python scripts used in this study. These scripts can be used to analysis next...
This folder contains a short pipeline (3 Python scripts) for partitioning loci haplotype data by the...
Custom python_scripts used in the analysis, including mutual best hit analysis, pairwise_p_distance ...
Script associated with the bioinformatics pipeline. The first script strings the programs together (...
This python script detects those SNPs that aren't within the specific distance of the restriction en...
Python scripts for extracting SNPs from 1-allele RAxML (phylip) files; and script for summarizing bo...
Python script used for making infiles for RAxML, MrBayes, and *BEAST analyses. Input is a nexus fil...
Nucleotide alignments of individual chloroplast genes. Python scripts for removal of masked sites. D...
This zip archive includes two python scripts referenced in the associated publication. Functionality...
Python script that converts pileup-format files to allele-specific SNP count text files
python script to establish the genomic position of candidate SNPs based on the gene predictions for ...
Python script for generating randomized nucleotide datasets of different lengths for analysis in RAx...
Bash shell and python scripts used to prepare alignments for gene tree inference, phase alleles, and...
Python script that reads from bam file based on presence of alleles in text file (text file with thr...
Extracts STACKS that contain SNPs fixed between two groups, where at least a certain number of popul...
This file contains the python scripts used in this study. These scripts can be used to analysis next...
This folder contains a short pipeline (3 Python scripts) for partitioning loci haplotype data by the...
Custom python_scripts used in the analysis, including mutual best hit analysis, pairwise_p_distance ...
Script associated with the bioinformatics pipeline. The first script strings the programs together (...
This python script detects those SNPs that aren't within the specific distance of the restriction en...
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