Additional file 2. Raw and processed read counts, alignment statistics, log2-fold changes in the gene expression, and K-means clusters and GO enrichment of differentially expressed genes from samples taken from C. thermocellum LL1210 cultured in chemostats at pH values 6.98, 6.48, pH 6.24, and pH 6.12 (washout conditions). Gene expression at pH 6.98 was used as a reference for differential expression at lower pH values
Additional file 2: Fig. S2. C. thermocellum growth profile in terms of production of metabolites (et...
Abstract Background The maintenance of internal pH in bacterial cells is challenged by natural stres...
Additional file 2. The genome-scale model iCth446 with GPRs and metabolite information, list of TICs
Additional file 1. Data logs, substrate and product concentrations, internal and external pH reading...
Additional file 7. Extracellular amino acid concentrations in media from C. thermocellum LL1210 chem...
Additional file 6: Table S3. Fold changes of intercellular metabolite there were significantly highe...
Additional file 3: Figure S1. Average optical density at wave-length 600nm (A and C) and average ter...
Additional file 5: Figure S3. Differential expression of genes found in Clostridia sporulation casca...
Abstract Background Clostridium (Ruminiclostridium) thermocellum is a model fermentative anaerobic t...
Additional file 4: Figure S2. Average growth (A), terminal pH (B), and remaining substrates and prod...
Additional file 5: Table S4. Expression level of transcripts for C. thermocellum grown on switchgras...
Additional file 2. Calculated differential expression and adjusted p values for genes showing signif...
Background: The thermophilic, anaerobic bacterium, Clostridium thermocellum is a model organism for ...
Additional file 8: Fig. S1. Temporal expression based clustering of proteins differentially expresse...
Additional file 1:Â Supplemental Tables. Table S1. Primers used in this study. Table S2. Calculation...
Additional file 2: Fig. S2. C. thermocellum growth profile in terms of production of metabolites (et...
Abstract Background The maintenance of internal pH in bacterial cells is challenged by natural stres...
Additional file 2. The genome-scale model iCth446 with GPRs and metabolite information, list of TICs
Additional file 1. Data logs, substrate and product concentrations, internal and external pH reading...
Additional file 7. Extracellular amino acid concentrations in media from C. thermocellum LL1210 chem...
Additional file 6: Table S3. Fold changes of intercellular metabolite there were significantly highe...
Additional file 3: Figure S1. Average optical density at wave-length 600nm (A and C) and average ter...
Additional file 5: Figure S3. Differential expression of genes found in Clostridia sporulation casca...
Abstract Background Clostridium (Ruminiclostridium) thermocellum is a model fermentative anaerobic t...
Additional file 4: Figure S2. Average growth (A), terminal pH (B), and remaining substrates and prod...
Additional file 5: Table S4. Expression level of transcripts for C. thermocellum grown on switchgras...
Additional file 2. Calculated differential expression and adjusted p values for genes showing signif...
Background: The thermophilic, anaerobic bacterium, Clostridium thermocellum is a model organism for ...
Additional file 8: Fig. S1. Temporal expression based clustering of proteins differentially expresse...
Additional file 1:Â Supplemental Tables. Table S1. Primers used in this study. Table S2. Calculation...
Additional file 2: Fig. S2. C. thermocellum growth profile in terms of production of metabolites (et...
Abstract Background The maintenance of internal pH in bacterial cells is challenged by natural stres...
Additional file 2. The genome-scale model iCth446 with GPRs and metabolite information, list of TICs