MOESM2 of Clostridium thermocellum DSM 1313 transcriptional responses to redox perturbation

MOESM5 of Clostridium thermocellum LL1210 pH homeostasis mechanisms informed by transcriptomics and metabolomics

Jason Whitham (5069207)
Ji-Won Moon (1719163)
Miguel Rodriguez (1594399)
Nancy Engle (3436811)
Dawn Klingeman (3469250)
Thomas Rydzak (394477)
Malaney Abel (5069210)
Timothy Tschaplinski (3436805)
Adam Guss (3455138)
Steven Brown (637397)

April 2018

Additional file 5: Figure S3. Differential expression of genes found in Clostridia sporulation casca...

Transcriptomic Analysis of E. coli after Exposure to a Sublethal Concentration of Hydrogen Peroxide Revealed a Coordinated Up-Regulation of the Cysteine Biosynthesis Pathway

Roth, Myriam
Jaquet, Vincent
Lemeille, Sylvain
Bonetti-Sarret, Eve-Julie
Cambet, Yves Alexandre
Francois, Patrice
Krause, Karl-Heinz

January 2022

Hydrogen peroxide (H2O2) is a key defense component of host-microbe interaction. However, H2O2concen...

G (2012) Comparative transcriptional analysis of clinically relevant heat stress response in Clostridium difficile strain 630. PLoS One 7: e42410. doi

Nigel G. Ternan
Shailesh Jain
Malay Srivastava
Geoff Mcmullan

August 2016

Clostridium difficile is considered to be one of the most important causes of health care-associated...

MOESM3 of Clostridium thermocellum DSM 1313 transcriptional responses to redox perturbation

Kyle Sander (3469253)
Charlotte Wilson (3466343)
Miguel Rodriguez (1594399)
Dawn Klingeman (3469250)
Thomas Rydzak (394477)
Brian Davison (1876909)
Steven Brown (637397)

December 2015

Additional file 3. (A) Adjusted OD600 of batch cultures grown at various initial hydrogen peroxide c...

MOESM2 of Clostridium thermocellum LL1210 pH homeostasis mechanisms informed by transcriptomics and metabolomics

Jason Whitham (5069207)
Ji-Won Moon (1719163)
Miguel Rodriguez (1594399)
Nancy Engle (3436811)
Dawn Klingeman (3469250)
Thomas Rydzak (394477)
Malaney Abel (5069210)
Timothy Tschaplinski (3436805)
Adam Guss (3455138)
Steven Brown (637397)

April 2018

Additional file 2. Raw and processed read counts, alignment statistics, log2-fold changes in the gen...

MOESM6 of Clostridium thermocellum LL1210 pH homeostasis mechanisms informed by transcriptomics and metabolomics

Jason Whitham (5069207)
Ji-Won Moon (1719163)
Miguel Rodriguez (1594399)
Nancy Engle (3436811)
Dawn Klingeman (3469250)
Thomas Rydzak (394477)
Malaney Abel (5069210)
Timothy Tschaplinski (3436805)
Adam Guss (3455138)
Steven Brown (637397)

April 2018

Additional file 6: Table S3. Fold changes of intercellular metabolite there were significantly highe...

Distinctive Oxidative Stress Responses to Hydrogen Peroxide in Sulfate Reducing Bacteria Desulfovibrio vulgaris Hildenborough

Zhou, Aifen

July 2009

Response of Desulfovibrio vulgaris Hildenborough to hydrogen peroxide (H2O2, 1 mM) was investigated ...

MOESM1 of Clostridium thermocellum LL1210 pH homeostasis mechanisms informed by transcriptomics and metabolomics

Jason Whitham (5069207)
Ji-Won Moon (1719163)
Miguel Rodriguez (1594399)
Nancy Engle (3436811)
Dawn Klingeman (3469250)
Thomas Rydzak (394477)
Malaney Abel (5069210)
Timothy Tschaplinski (3436805)
Adam Guss (3455138)
Steven Brown (637397)

April 2018

Additional file 1. Data logs, substrate and product concentrations, internal and external pH reading...

MOESM1 of Improved growth rate in Clostridium thermocellum hydrogenase mutant via perturbed sulfur metabolism

Ranjita Biswas (586794)
Charlotte Wilson (3466343)
Richard Giannone (3455150)
Dawn Klingeman (3469250)
Thomas Rydzak (394477)
Manesh Shah (117747)
Robert Hettich (3455141)
Steven Brown (637397)
Adam Guss (3455138)

January 2017

Additional file 1:Â Supplemental Tables. Table S1. Primers used in this study. Table S2. Calculation...

MOESM1 of OhsR acts as an organic peroxide-sensing transcriptional activator using an S-mycothiolation mechanism in Corynebacterium glutamicum

Meiru Si (675416)
Tao Su (409037)
Can Chen (675404)
Jinfeng Liu (32678)
Zhijin Gong (6158687)
Chengchuan Che (4849825)
GuiZhi Li (6158690)
Ge Yang (169466)

December 2018

Additional file 1: Table S1. Bacterial strains and plasmids used in this study. Table S2. Primers us...

MOESM4 of H2 drives metabolic rearrangements in gas-fermenting Clostridium autoethanogenum

Kaspar Valgepea (4901794)
Renato Souza Pinto Lemgruber (4901800)
Tanus Abdalla (4901791)
Steve Binos (300414)
Nobuaki Takemori (696196)
Ayako Takemori (4326655)
Yuki Tanaka (112000)
Ryan Tappel (4901797)
Michael Köpke (405397)
Séan Simpson (3400364)
Lars Nielsen (664146)
Esteban Marcellin (1677523)

March 2018

Additional file 4. Results of quantitative proteome analysis. Table S5. List of SIL-proteins with di...

Microarray analysis of the transcriptional responses of Clostridium difficile to environmental and antibiotic stress.

Emerson, Jenny E
Stabler, Richard A
Wren, Brendan W
Fairweather, Neil F

January 2008

Clostridium difficile is a spore-forming anaerobic bacterium that is an emerging nosocomial threat; ...

Elesclomol induced transcriptomic changes in redox homeostasis genes.

Rebecca E. Graham (17616132)
Richard J. R. Elliott (8883629)
Alison F. Munro (8883632)
Neil O. Carragher (1324512)

December 2023

A) Volcano plot for elesclomol induced differential expression analysis across FLO-1, JH-EsoAD1, SK-...

Comparative transcriptional analysis of clinically relevant heat stress response in Clostridium difficile strain 630.

Nigel G Ternan
Shailesh Jain
Malay Srivastava
Geoff McMullan

Clostridium difficile is considered to be one of the most important causes of health care-associated...

Distinct Responses of Mycobacterium smegmatis to Exposure to Low and High Levels of Hydrogen Peroxide.

Xiaojing Li
Jun Wu
Jiao Han
Yongfei Hu
Kaixia Mi

Hydrogen peroxide (H2O2) is a natural oxidant produced by aerobic organisms and gives rise to oxidat...

MOESM5 of Clostridium thermocellum LL1210 pH homeostasis mechanisms informed by transcriptomics and metabolomics

Jason Whitham (5069207)
Ji-Won Moon (1719163)
Miguel Rodriguez (1594399)
Nancy Engle (3436811)
Dawn Klingeman (3469250)
Thomas Rydzak (394477)
Malaney Abel (5069210)
Timothy Tschaplinski (3436805)
Adam Guss (3455138)
Steven Brown (637397)

April 2018

Additional file 5: Figure S3. Differential expression of genes found in Clostridia sporulation casca...

Transcriptomic Analysis of E. coli after Exposure to a Sublethal Concentration of Hydrogen Peroxide Revealed a Coordinated Up-Regulation of the Cysteine Biosynthesis Pathway

Roth, Myriam
Jaquet, Vincent
Lemeille, Sylvain
Bonetti-Sarret, Eve-Julie
Cambet, Yves Alexandre
Francois, Patrice
Krause, Karl-Heinz

January 2022

Hydrogen peroxide (H2O2) is a key defense component of host-microbe interaction. However, H2O2concen...

G (2012) Comparative transcriptional analysis of clinically relevant heat stress response in Clostridium difficile strain 630. PLoS One 7: e42410. doi

Nigel G. Ternan
Shailesh Jain
Malay Srivastava
Geoff Mcmullan

August 2016

Clostridium difficile is considered to be one of the most important causes of health care-associated...

MOESM3 of Clostridium thermocellum DSM 1313 transcriptional responses to redox perturbation

Kyle Sander (3469253)
Charlotte Wilson (3466343)
Miguel Rodriguez (1594399)
Dawn Klingeman (3469250)
Thomas Rydzak (394477)
Brian Davison (1876909)
Steven Brown (637397)

December 2015

Additional file 3. (A) Adjusted OD600 of batch cultures grown at various initial hydrogen peroxide c...

MOESM2 of Clostridium thermocellum LL1210 pH homeostasis mechanisms informed by transcriptomics and metabolomics

Jason Whitham (5069207)
Ji-Won Moon (1719163)
Miguel Rodriguez (1594399)
Nancy Engle (3436811)
Dawn Klingeman (3469250)
Thomas Rydzak (394477)
Malaney Abel (5069210)
Timothy Tschaplinski (3436805)
Adam Guss (3455138)
Steven Brown (637397)

April 2018

Additional file 2. Raw and processed read counts, alignment statistics, log2-fold changes in the gen...

MOESM6 of Clostridium thermocellum LL1210 pH homeostasis mechanisms informed by transcriptomics and metabolomics

Jason Whitham (5069207)
Ji-Won Moon (1719163)
Miguel Rodriguez (1594399)
Nancy Engle (3436811)
Dawn Klingeman (3469250)
Thomas Rydzak (394477)
Malaney Abel (5069210)
Timothy Tschaplinski (3436805)
Adam Guss (3455138)
Steven Brown (637397)

April 2018

Additional file 6: Table S3. Fold changes of intercellular metabolite there were significantly highe...

Distinctive Oxidative Stress Responses to Hydrogen Peroxide in Sulfate Reducing Bacteria Desulfovibrio vulgaris Hildenborough

Zhou, Aifen

July 2009

Response of Desulfovibrio vulgaris Hildenborough to hydrogen peroxide (H2O2, 1 mM) was investigated ...

MOESM1 of Clostridium thermocellum LL1210 pH homeostasis mechanisms informed by transcriptomics and metabolomics

Jason Whitham (5069207)
Ji-Won Moon (1719163)
Miguel Rodriguez (1594399)
Nancy Engle (3436811)
Dawn Klingeman (3469250)
Thomas Rydzak (394477)
Malaney Abel (5069210)
Timothy Tschaplinski (3436805)
Adam Guss (3455138)
Steven Brown (637397)

April 2018

Additional file 1. Data logs, substrate and product concentrations, internal and external pH reading...

MOESM1 of Improved growth rate in Clostridium thermocellum hydrogenase mutant via perturbed sulfur metabolism

Ranjita Biswas (586794)
Charlotte Wilson (3466343)
Richard Giannone (3455150)
Dawn Klingeman (3469250)
Thomas Rydzak (394477)
Manesh Shah (117747)
Robert Hettich (3455141)
Steven Brown (637397)
Adam Guss (3455138)

January 2017

Additional file 1:Â Supplemental Tables. Table S1. Primers used in this study. Table S2. Calculation...

MOESM1 of OhsR acts as an organic peroxide-sensing transcriptional activator using an S-mycothiolation mechanism in Corynebacterium glutamicum

Meiru Si (675416)
Tao Su (409037)
Can Chen (675404)
Jinfeng Liu (32678)
Zhijin Gong (6158687)
Chengchuan Che (4849825)
GuiZhi Li (6158690)
Ge Yang (169466)

December 2018

Additional file 1: Table S1. Bacterial strains and plasmids used in this study. Table S2. Primers us...

MOESM4 of H2 drives metabolic rearrangements in gas-fermenting Clostridium autoethanogenum

Kaspar Valgepea (4901794)
Renato Souza Pinto Lemgruber (4901800)
Tanus Abdalla (4901791)
Steve Binos (300414)
Nobuaki Takemori (696196)
Ayako Takemori (4326655)
Yuki Tanaka (112000)
Ryan Tappel (4901797)
Michael Köpke (405397)
Séan Simpson (3400364)
Lars Nielsen (664146)
Esteban Marcellin (1677523)

March 2018

Additional file 4. Results of quantitative proteome analysis. Table S5. List of SIL-proteins with di...

Microarray analysis of the transcriptional responses of Clostridium difficile to environmental and antibiotic stress.

Emerson, Jenny E
Stabler, Richard A
Wren, Brendan W
Fairweather, Neil F

January 2008

Clostridium difficile is a spore-forming anaerobic bacterium that is an emerging nosocomial threat; ...

Elesclomol induced transcriptomic changes in redox homeostasis genes.

Rebecca E. Graham (17616132)
Richard J. R. Elliott (8883629)
Alison F. Munro (8883632)
Neil O. Carragher (1324512)

December 2023

A) Volcano plot for elesclomol induced differential expression analysis across FLO-1, JH-EsoAD1, SK-...

Comparative transcriptional analysis of clinically relevant heat stress response in Clostridium difficile strain 630.

Nigel G Ternan
Shailesh Jain
Malay Srivastava
Geoff McMullan

Clostridium difficile is considered to be one of the most important causes of health care-associated...

Distinct Responses of Mycobacterium smegmatis to Exposure to Low and High Levels of Hydrogen Peroxide.

Xiaojing Li
Jun Wu
Jiao Han
Yongfei Hu
Kaixia Mi

Hydrogen peroxide (H2O2) is a natural oxidant produced by aerobic organisms and gives rise to oxidat...

MOESM5 of Clostridium thermocellum LL1210 pH homeostasis mechanisms informed by transcriptomics and metabolomics

Jason Whitham (5069207)
Ji-Won Moon (1719163)
Miguel Rodriguez (1594399)
Nancy Engle (3436811)
Dawn Klingeman (3469250)
Thomas Rydzak (394477)
Malaney Abel (5069210)
Timothy Tschaplinski (3436805)
Adam Guss (3455138)
Steven Brown (637397)

April 2018

Additional file 5: Figure S3. Differential expression of genes found in Clostridia sporulation casca...

Transcriptomic Analysis of E. coli after Exposure to a Sublethal Concentration of Hydrogen Peroxide Revealed a Coordinated Up-Regulation of the Cysteine Biosynthesis Pathway

Roth, Myriam
Jaquet, Vincent
Lemeille, Sylvain
Bonetti-Sarret, Eve-Julie
Cambet, Yves Alexandre
Francois, Patrice
Krause, Karl-Heinz

January 2022

Hydrogen peroxide (H2O2) is a key defense component of host-microbe interaction. However, H2O2concen...

G (2012) Comparative transcriptional analysis of clinically relevant heat stress response in Clostridium difficile strain 630. PLoS One 7: e42410. doi

Nigel G. Ternan
Shailesh Jain
Malay Srivastava
Geoff Mcmullan

August 2016

Clostridium difficile is considered to be one of the most important causes of health care-associated...

MOESM2 of Clostridium thermocellum DSM 1313 transcriptional responses to redox perturbation

Abstract

Extracted data

MOESM2 of Clostridium thermocellum DSM 1313 transcriptional responses to redox perturbation

Abstract

Extracted data

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