Definition of FD and PD multiple alignments: DNA-binding domains of proteins 1JHG and 1LMB from are shown

<p><b>Copyright information:</b></p><p>Taken from "Detecting DNA-binding helix–turn–helix structural motifs using sequence and structure information"</p><p>Nucleic Acids Research 2005;33(7):2129-2140.</p><p>Published online 14 Apr 2005</p><p>PMCID:PMC1079965.</p><p>© The Author 2005. Published by Oxford University Press. All rights reserved</p> Structures: the HTH motifs are highlighted in red. Multiple sequence alignments: all the shown alignments correspond to families Pfam seed alignments. The solid-lined boxes set the edges of multiple sequence alignments corresponding to the HTH sequences as found in the family templates 1JHG and 1LMB (red sequence)