Modeling predictions are based on the eight strain training set (see 'Mathematical development of a finite supragenome model'). The number of genes observed in all strains levels off to an asymptote that corresponds to a core set of genes. The rate of increase in total genes decreases, but does not level off due to the discovery of rare genes.<p><b>Copyright information:</b></p><p>Taken from "Characterization and modeling of the core and supragenomes based on the complete genomic sequences of Rd and 12 clinical nontypeable strains"</p><p>http://genomebiology.com/2007/8/6/R103</p><p>Genome Biology 2007;8(6):R103-R103.</p><p>Published online 5 Jun 2007</p><p>PMCID:PMC2394751.</p><p></p
The comparison of two strains is found at the intersection of the row and column corresponding to th...
<div><p>(A) Results from Structure under different assumptions about the number of clusters (<i>K</i...
<p>A) Likelihood of association of individual CDSs within the accessory genome with outbreak clades....
Modeling predictions are based on the eight strain training set (see 'Mathematical development of a ...
The plot was generated using strains isolated in North America, and the extrapolation may not hold f...
65 identity and 0.70 match length. The inflection, which minimizes the rate of change in the number ...
<p>(A) Z. <i>mobilis</i> core genome. Each point represents the number of conserved genes between ge...
*<p>The ratio of observed clustering to expected clustering for the lists of differentially expresse...
<p>The discovery order of genomes was permuted 100 times with the total number of genes discovered s...
<p><i>A,</i> The genes up-regulated at 5 days were grouped into 13 significantly enriched annotation...
<p>Clusters were tested for enrichment in other gene categorizations by cumulative hypergeometric di...
<p>Panels (A) and (B) are based on all protein-coding genes, panels (C) and (D) are based on the put...
Ogy to the (A), (P), (O) gene models. Effect of the sequence length on the proportion of homology to...
<div><p>(A) Clustergram containing all strains significant in two or more array experiments. Raw fit...
BACKGROUND: Genotype networks are representations of genetic variation data that are complementary t...
The comparison of two strains is found at the intersection of the row and column corresponding to th...
<div><p>(A) Results from Structure under different assumptions about the number of clusters (<i>K</i...
<p>A) Likelihood of association of individual CDSs within the accessory genome with outbreak clades....
Modeling predictions are based on the eight strain training set (see 'Mathematical development of a ...
The plot was generated using strains isolated in North America, and the extrapolation may not hold f...
65 identity and 0.70 match length. The inflection, which minimizes the rate of change in the number ...
<p>(A) Z. <i>mobilis</i> core genome. Each point represents the number of conserved genes between ge...
*<p>The ratio of observed clustering to expected clustering for the lists of differentially expresse...
<p>The discovery order of genomes was permuted 100 times with the total number of genes discovered s...
<p><i>A,</i> The genes up-regulated at 5 days were grouped into 13 significantly enriched annotation...
<p>Clusters were tested for enrichment in other gene categorizations by cumulative hypergeometric di...
<p>Panels (A) and (B) are based on all protein-coding genes, panels (C) and (D) are based on the put...
Ogy to the (A), (P), (O) gene models. Effect of the sequence length on the proportion of homology to...
<div><p>(A) Clustergram containing all strains significant in two or more array experiments. Raw fit...
BACKGROUND: Genotype networks are representations of genetic variation data that are complementary t...
The comparison of two strains is found at the intersection of the row and column corresponding to th...
<div><p>(A) Results from Structure under different assumptions about the number of clusters (<i>K</i...
<p>A) Likelihood of association of individual CDSs within the accessory genome with outbreak clades....