<p>Max stands for the largest contig length. While ccTSA produced comparable sequencing quality and superior sequencing speed, its memory usage was not much better than the other assemblers, especially compared to ABySS on large datasets.</p
<p>Results from 44 genome assemblies produced by 7 different assemblers measured by 2 metrics:</p> <...
<p>We used the C.elegans, Illumina, and 75 bp reads, chose the pruning interval as 10 M reads, and i...
<p>A) <i>De novo</i> assemblies of 75×2 bp paired end reads (insert size 150–300 bp). B) Scaffolding...
<p>(A) E.coli, Exact, and 36 bp, (B) E.coli, Illumina, and 75 bp, and (C) L.major, Illumina, and 75 ...
<p>Number of reads per sample represents only those from which the indicator MID sequence was recove...
<p>a) <b>Contig Length Distribution.</b> Histograms of the contig lengths illustrate the number of c...
<p>(A) E.coli, (B) S.cerevisiae, (C) L.major, and (D) C.elegans. The k-mer values were varied from 1...
<p>The memory usage for all tools is based on a single overlap threshold or <i>k-mer</i> and is eval...
<p>The memory usage for all tools is based on a single overlap threshold or <i>k-mer</i> and is eval...
a<p>Number of reads used for assemblage. <sup>b</sup>Number of reads assembled into contigs. <sup>c<...
<p>All Illumina reads of non-challenged (NC), challenged-mild pathology (MD) and challenged-severe p...
<p>Comparison of the assembly accuracy between PMAG and its greedy version. The number of genomes is...
1<p>- for Sanger reads there were no contigs assembled from combining more than one read, therefore ...
<p>The N50 statistic is the minimum length of a feature (contig, scaffold, gap) such that using equa...
<div><p>De novo sequencing, a process to find the whole genome or the regions of a species without r...
<p>Results from 44 genome assemblies produced by 7 different assemblers measured by 2 metrics:</p> <...
<p>We used the C.elegans, Illumina, and 75 bp reads, chose the pruning interval as 10 M reads, and i...
<p>A) <i>De novo</i> assemblies of 75×2 bp paired end reads (insert size 150–300 bp). B) Scaffolding...
<p>(A) E.coli, Exact, and 36 bp, (B) E.coli, Illumina, and 75 bp, and (C) L.major, Illumina, and 75 ...
<p>Number of reads per sample represents only those from which the indicator MID sequence was recove...
<p>a) <b>Contig Length Distribution.</b> Histograms of the contig lengths illustrate the number of c...
<p>(A) E.coli, (B) S.cerevisiae, (C) L.major, and (D) C.elegans. The k-mer values were varied from 1...
<p>The memory usage for all tools is based on a single overlap threshold or <i>k-mer</i> and is eval...
<p>The memory usage for all tools is based on a single overlap threshold or <i>k-mer</i> and is eval...
a<p>Number of reads used for assemblage. <sup>b</sup>Number of reads assembled into contigs. <sup>c<...
<p>All Illumina reads of non-challenged (NC), challenged-mild pathology (MD) and challenged-severe p...
<p>Comparison of the assembly accuracy between PMAG and its greedy version. The number of genomes is...
1<p>- for Sanger reads there were no contigs assembled from combining more than one read, therefore ...
<p>The N50 statistic is the minimum length of a feature (contig, scaffold, gap) such that using equa...
<div><p>De novo sequencing, a process to find the whole genome or the regions of a species without r...
<p>Results from 44 genome assemblies produced by 7 different assemblers measured by 2 metrics:</p> <...
<p>We used the C.elegans, Illumina, and 75 bp reads, chose the pruning interval as 10 M reads, and i...
<p>A) <i>De novo</i> assemblies of 75×2 bp paired end reads (insert size 150–300 bp). B) Scaffolding...
DOI
Add to ORKG