Thumbnail of GO category versus gene list CIM for sets of genes with correlation ≥0.60 across both the NCI-60 and GBM samples.

Directed acyclic graph (DAG) representing the enriched GO categories in the HLA class I stimulated EC cytoskeleton isolation.

Mary E. Ziegler (188427)
Puneet Souda (188429)
Yi-Ping Jin (188433)
Julian P. Whitelegge (188435)
Elaine F. Reed (188438)

January 2012

The Gene Ontology (GO) enrichment analysis tool called Gene Onology Tree Machine (GOTM) was used ...

The list of GO terms used in the current study and the number of genes annotated to each process.

Shiri Stempler (130579)
Eytan Ruppin (23002)

September 2012

The list of GO terms used in the current study and the number of genes annotated to each process....

GO terms and genes common to them identified in topGO analysis illustrating down-regulated gene probesets in C57 Hx compared to C57 Nx samples ((adjusted p-value <0.01, log-fold change >1).

Qi Li (67548)
Sandra Canosa (469831)
Kelly Flynn (469833)
Michael Michaud (291858)
Michael Krauthammer (267051)
Joseph A. Madri (250948)

October 2013

GO terms and genes common to them identified in topGO analysis illustrating down-regulated gene p...

Summary of high ranking genes with correlation ≥0.60 across both NCI-60 and GBM.

Barry R. Zeeberg (149545)
Kurt W. Kohn (149546)
Ari Kahn (149547)
Vladimir Larionov (55853)
John N. Weinstein (30992)
William Reinhold (2630)
Yves Pommier (11158)

July 2012

The designated gene (G) appearing in the gene column is the representative of a group of genes th...

Thumbnails of gene correlation clustering for Cluster 52 genes across (A) NCI-60 cell lines and (B) TCGA GBM samples.

Barry R. Zeeberg (149545)
Kurt W. Kohn (149546)
Ari Kahn (149547)
Vladimir Larionov (55853)
John N. Weinstein (30992)
William Reinhold (2630)
Yves Pommier (11158)

July 2012

The full size figures are available as Figures S1 and S2. The numbers appended after the gene nam...

Thumbnails of gene correlation clustering for Cluster 68 genes across (A) the NCI-60 cell lines and GBM samples (B).

Barry R. Zeeberg (149545)
Kurt W. Kohn (149546)
Ari Kahn (149547)
Vladimir Larionov (55853)
John N. Weinstein (30992)
William Reinhold (2630)
Yves Pommier (11158)

July 2012

The full size figures are available as Figures S3 and S4. The numbers appended after the gene nam...

Comparison of the distribution of GO terms.

Alexandre Augusto Pereira Firmino (502942)
Fernando Campos de Assis Fonseca (502943)
Leonardo Lima Pepino de Macedo (502944)
Roberta Ramos Coelho (502945)
José Dijair Antonino de Souza Jr (502946)
Roberto Coiti Togawa (502947)
Orzenil Bonfim Silva-Junior (502948)
Georgios Joannis Pappas-Jr (502949)
Maria Cristina Mattar da Silva (502950)
Gilbert Engler (48781)
Maria Fatima Grossi-de-Sa (502951)

December 2013

The X-axis shows subgroups of cellular component, molecular functions and biological process from...

Over-represented GO-categories in the common gene list.

Pankaj Barah (394071)
Per Winge (224971)
Anna Kusnierczyk (394072)
Diem Hong Tran (394073)
Atle M. Bones (224972)

March 2013

Network representations of enriched GO categories among the genes that were differentially regula...

Comparison of the ‘Molecular Function’ GO term distributions for the 623 KUROV (black) and 2000 (gray) genes.

Raymond Romand (694926)
Raymond Ripp (13950)
Laetitia Poidevin (66892)
Marcel Boeglin (694927)
Lars Geffers (232897)
Pascal Dollé (179833)
Olivier Poch (13951)

February 2015

A: Most populated GO terms. After each GO term, the total number of genes verifying a given GO te...

GO Analyses and Functional Grouping of the Molecular Backbone and Signatures

Michael Rendl (59695)
Lisa Lewis (59696)
Elaine Fuchs (59697)

February 2013

<div>(A) GO analyses of ~4,000 genes present and unchanged in all five fractions irrespective of ...

GO term enrichment map for the library of down- and up-regulated genes.

Oliver Philipp (500619)
Andrea Hamann (120836)
Jörg Servos (120834)
Alexandra Werner (356886)
Ina Koch (7903)
Heinz D. Osiewacz (120841)

December 2013

Each node represents one GO term. The thickness of the edges represents the number of genes share...

GONOME: measuring correlations between GO terms and genomic positions

Stanley, Stefan M.
Bailey, Timothy L.
Mattick, John S.

January 2006

Background: Current methods to find significantly under- and over-represented gene ontology (GO) ter...

GOurmet: A tool for quantitative comparison and visualization of gene expression profiles based on gene ontology (GO) distributions-0

Jason M Doherty (72686)
Lynn K Carmichael (72687)
Jason C Mills (72688)

December 2011

Copyright information:Taken from "GOurmet: A tool for quantitative comparison and v...

Tabular Report Used in Selecting Important Genes and Important GO.

Mario Fruzangohar (387648)
Esmaeil Ebrahimie (112083)
Abiodun D. Ogunniyi (198305)
Layla K. Mahdi (387649)
James C. Paton (198315)
David L. Adelson (110514)

March 2013

Genes located under ‘common genes’ column are the most important genes in each GO item. On the ot...

Over-represented GO terms of neighbor genes of 5′ end gene-proximate intergenic ncRNAs in human (A), mouse (B) and zebrafish (C).

Zhipeng Qu (110511)
David L. Adelson (110514)

December 2012

The bubble color indicates the P-value (EASE score from DAVID); bubble size indicates the frequen...

Directed acyclic graph (DAG) representing the enriched GO categories in the HLA class I stimulated EC cytoskeleton isolation.

Mary E. Ziegler (188427)
Puneet Souda (188429)
Yi-Ping Jin (188433)
Julian P. Whitelegge (188435)
Elaine F. Reed (188438)

January 2012

The Gene Ontology (GO) enrichment analysis tool called Gene Onology Tree Machine (GOTM) was used ...

The list of GO terms used in the current study and the number of genes annotated to each process.

Shiri Stempler (130579)
Eytan Ruppin (23002)

September 2012

The list of GO terms used in the current study and the number of genes annotated to each process....

GO terms and genes common to them identified in topGO analysis illustrating down-regulated gene probesets in C57 Hx compared to C57 Nx samples ((adjusted p-value <0.01, log-fold change >1).

Qi Li (67548)
Sandra Canosa (469831)
Kelly Flynn (469833)
Michael Michaud (291858)
Michael Krauthammer (267051)
Joseph A. Madri (250948)

October 2013

GO terms and genes common to them identified in topGO analysis illustrating down-regulated gene p...

Summary of high ranking genes with correlation ≥0.60 across both NCI-60 and GBM.

Barry R. Zeeberg (149545)
Kurt W. Kohn (149546)
Ari Kahn (149547)
Vladimir Larionov (55853)
John N. Weinstein (30992)
William Reinhold (2630)
Yves Pommier (11158)

July 2012

The designated gene (G) appearing in the gene column is the representative of a group of genes th...

Thumbnails of gene correlation clustering for Cluster 52 genes across (A) NCI-60 cell lines and (B) TCGA GBM samples.

Barry R. Zeeberg (149545)
Kurt W. Kohn (149546)
Ari Kahn (149547)
Vladimir Larionov (55853)
John N. Weinstein (30992)
William Reinhold (2630)
Yves Pommier (11158)

July 2012

The full size figures are available as Figures S1 and S2. The numbers appended after the gene nam...

Thumbnails of gene correlation clustering for Cluster 68 genes across (A) the NCI-60 cell lines and GBM samples (B).

Barry R. Zeeberg (149545)
Kurt W. Kohn (149546)
Ari Kahn (149547)
Vladimir Larionov (55853)
John N. Weinstein (30992)
William Reinhold (2630)
Yves Pommier (11158)

July 2012

The full size figures are available as Figures S3 and S4. The numbers appended after the gene nam...

Comparison of the distribution of GO terms.

Alexandre Augusto Pereira Firmino (502942)
Fernando Campos de Assis Fonseca (502943)
Leonardo Lima Pepino de Macedo (502944)
Roberta Ramos Coelho (502945)
José Dijair Antonino de Souza Jr (502946)
Roberto Coiti Togawa (502947)
Orzenil Bonfim Silva-Junior (502948)
Georgios Joannis Pappas-Jr (502949)
Maria Cristina Mattar da Silva (502950)
Gilbert Engler (48781)
Maria Fatima Grossi-de-Sa (502951)

December 2013

The X-axis shows subgroups of cellular component, molecular functions and biological process from...

Over-represented GO-categories in the common gene list.

Pankaj Barah (394071)
Per Winge (224971)
Anna Kusnierczyk (394072)
Diem Hong Tran (394073)
Atle M. Bones (224972)

March 2013

Network representations of enriched GO categories among the genes that were differentially regula...

Comparison of the ‘Molecular Function’ GO term distributions for the 623 KUROV (black) and 2000 (gray) genes.

Raymond Romand (694926)
Raymond Ripp (13950)
Laetitia Poidevin (66892)
Marcel Boeglin (694927)
Lars Geffers (232897)
Pascal Dollé (179833)
Olivier Poch (13951)

February 2015

A: Most populated GO terms. After each GO term, the total number of genes verifying a given GO te...

GO Analyses and Functional Grouping of the Molecular Backbone and Signatures

Michael Rendl (59695)
Lisa Lewis (59696)
Elaine Fuchs (59697)

February 2013

<div>(A) GO analyses of ~4,000 genes present and unchanged in all five fractions irrespective of ...

GO term enrichment map for the library of down- and up-regulated genes.

Oliver Philipp (500619)
Andrea Hamann (120836)
Jörg Servos (120834)
Alexandra Werner (356886)
Ina Koch (7903)
Heinz D. Osiewacz (120841)

December 2013

Each node represents one GO term. The thickness of the edges represents the number of genes share...

GONOME: measuring correlations between GO terms and genomic positions

Stanley, Stefan M.
Bailey, Timothy L.
Mattick, John S.

January 2006

Background: Current methods to find significantly under- and over-represented gene ontology (GO) ter...

GOurmet: A tool for quantitative comparison and visualization of gene expression profiles based on gene ontology (GO) distributions-0

Jason M Doherty (72686)
Lynn K Carmichael (72687)
Jason C Mills (72688)

December 2011

Copyright information:Taken from "GOurmet: A tool for quantitative comparison and v...

Tabular Report Used in Selecting Important Genes and Important GO.

Mario Fruzangohar (387648)
Esmaeil Ebrahimie (112083)
Abiodun D. Ogunniyi (198305)
Layla K. Mahdi (387649)
James C. Paton (198315)
David L. Adelson (110514)

March 2013

Genes located under ‘common genes’ column are the most important genes in each GO item. On the ot...

Over-represented GO terms of neighbor genes of 5′ end gene-proximate intergenic ncRNAs in human (A), mouse (B) and zebrafish (C).

Zhipeng Qu (110511)
David L. Adelson (110514)

December 2012

The bubble color indicates the P-value (EASE score from DAVID); bubble size indicates the frequen...

Directed acyclic graph (DAG) representing the enriched GO categories in the HLA class I stimulated EC cytoskeleton isolation.

Mary E. Ziegler (188427)
Puneet Souda (188429)
Yi-Ping Jin (188433)
Julian P. Whitelegge (188435)
Elaine F. Reed (188438)

January 2012

The Gene Ontology (GO) enrichment analysis tool called Gene Onology Tree Machine (GOTM) was used ...

The list of GO terms used in the current study and the number of genes annotated to each process.

Shiri Stempler (130579)
Eytan Ruppin (23002)

September 2012

The list of GO terms used in the current study and the number of genes annotated to each process....

GO terms and genes common to them identified in topGO analysis illustrating down-regulated gene probesets in C57 Hx compared to C57 Nx samples ((adjusted p-value <0.01, log-fold change >1).

Qi Li (67548)
Sandra Canosa (469831)
Kelly Flynn (469833)
Michael Michaud (291858)
Michael Krauthammer (267051)
Joseph A. Madri (250948)

October 2013

GO terms and genes common to them identified in topGO analysis illustrating down-regulated gene p...

Thumbnail of GO category <i>versus</i> gene list CIM for sets of genes with correlation ≥0.60 across both the NCI-60 and GBM samples.

Abstract

Extracted data

Thumbnail of GO category <i>versus</i> gene list CIM for sets of genes with correlation ≥0.60 across both the NCI-60 and GBM samples.

Abstract

Extracted data

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