<p>The axis indicates lowest to highest gene density. (a) The axis indicates the total number of H3K27me3 ChIP-seq fragments divided by the number of Mbp regions (counts per megabase) found in each gene density. (b) The plots are re-normalized so that the axis range is same for both ES and NP cell data. We see that the enrichment level of ChIP-seq data increases with respect to gene density for both ES and NP cells.</p
<p>Genes were binned according to their median expression level across 58 microarrays representing d...
<p>Enrichment test results for ChIP-seq tags for specific TFs in HAc-valley regulatory elements with...
<p>The abbreviations for the each population on found on the x and y-axes. The numbers in each block...
<p>(A-B) Peaks lacking MDAm are highly concentrated within 1 kb of the TSS in the ChIP-seq data sets...
<p>We grouped the genes into bins (200 genes in each bin) according to their (A) cPI and (B) nPI val...
<p>Gene dense regions tend to contain more binding events (peaks) than gene sparse regions of the ge...
<p>The ratio of −log<sub>10</sub>(p-value of enrichment) of differentially expressed genes (FDR<0.1)...
<p>(<b>A</b>) Representative distribution of gene expression level and H3K27me3 abundance (as determ...
<p>(A) Heatmap of maximal read coverage in 300 bp bins from −3.15 kb to +3.15 kb of the peak summits...
ChIP-Seq has rapidly become the dominant experimental technique in functional genomic and epigenomic...
<p>GSEA plots for chip to chip comparisons of unregulated genes for HB3 12 hpi vs 36 hpi samples. Bl...
<p>Enrichment for a given cell type is calculated based on overlap between H3K4me3 chip-seq peaks fo...
<p>X axis represents the position in bases relative to the transcriptional start site (TSS, position...
<p>The colour key represents the FPKM (Fragments Per Kilobase of exon per Million fragments mapped) ...
The plot shows the two-dimensional histogram distribution of NET-seq and Pol2 data. The number of ge...
<p>Genes were binned according to their median expression level across 58 microarrays representing d...
<p>Enrichment test results for ChIP-seq tags for specific TFs in HAc-valley regulatory elements with...
<p>The abbreviations for the each population on found on the x and y-axes. The numbers in each block...
<p>(A-B) Peaks lacking MDAm are highly concentrated within 1 kb of the TSS in the ChIP-seq data sets...
<p>We grouped the genes into bins (200 genes in each bin) according to their (A) cPI and (B) nPI val...
<p>Gene dense regions tend to contain more binding events (peaks) than gene sparse regions of the ge...
<p>The ratio of −log<sub>10</sub>(p-value of enrichment) of differentially expressed genes (FDR<0.1)...
<p>(<b>A</b>) Representative distribution of gene expression level and H3K27me3 abundance (as determ...
<p>(A) Heatmap of maximal read coverage in 300 bp bins from −3.15 kb to +3.15 kb of the peak summits...
ChIP-Seq has rapidly become the dominant experimental technique in functional genomic and epigenomic...
<p>GSEA plots for chip to chip comparisons of unregulated genes for HB3 12 hpi vs 36 hpi samples. Bl...
<p>Enrichment for a given cell type is calculated based on overlap between H3K4me3 chip-seq peaks fo...
<p>X axis represents the position in bases relative to the transcriptional start site (TSS, position...
<p>The colour key represents the FPKM (Fragments Per Kilobase of exon per Million fragments mapped) ...
The plot shows the two-dimensional histogram distribution of NET-seq and Pol2 data. The number of ge...
<p>Genes were binned according to their median expression level across 58 microarrays representing d...
<p>Enrichment test results for ChIP-seq tags for specific TFs in HAc-valley regulatory elements with...
<p>The abbreviations for the each population on found on the x and y-axes. The numbers in each block...