<p>Circos plot showing the genomic location of the 350 genes that recurrently showed two types of aberrations. The locations are colour-coded according to the type of aberrations; orange, hypo-methylation/over-expression; blue, hyper-methylation/under-expression; green, gain/over-expression; red, loss/under-expression; gray, (gain or hypo-methylation)/over-expression and (loss or hyper-methylation)/under-expression. The genomic location of the 14 homeobox genes in the list is indicated in the outermost circle.</p
<p>This demonstrates the first exons of either the <i>VHL</i> gene (A) or the <i>SFRP1</i> gene (B) ...
<p>Genomic regions enriched with downregulated genes affected by promoter hypermethylation.</p
<p>(B) The Correlation Maps app on the USeq platform was used to locate any specific chromosomal enr...
A–Number of sites with different fractions of methylation. Colors represent sites located in one of ...
<p>The first (outer) circle represents the human chromosome. From the second to the inner, circles h...
<p>Illustrations showing genomic context and individual CpG methylation levels at three separate MPR...
<p>(A) Pairwise plots of CG (left), CHG (middle), and CHH (right) methylation levels (Y-axis, D homo...
<p>Positions of DNA methylation and gene expression assays are also shown. Black circles denote DNA ...
<p>(A) Graphical explanation of how the distribution of M-scores and IQR are transformed into violin...
<p>The heat map of these genes shows different methylation between tumor tissues and normal tissues....
<p>(A) Percentage of DMRs in TE (brown), intergenic region (green), exon (dark yellow) and intron (b...
<p>The frequency of samples with gains (red) and losses (green) is shown at the top. Each gray point...
<p>Table with six genes per tissue highlighting the tissue specificity of the genes found near dDMRs...
<p>y-axis: number of changed genes, x-axis: chromosomal position. The arrow indicates the location o...
<p>The chromosomal number and relative size are presented. The DMR (arrow), gene expression changes ...
<p>This demonstrates the first exons of either the <i>VHL</i> gene (A) or the <i>SFRP1</i> gene (B) ...
<p>Genomic regions enriched with downregulated genes affected by promoter hypermethylation.</p
<p>(B) The Correlation Maps app on the USeq platform was used to locate any specific chromosomal enr...
A–Number of sites with different fractions of methylation. Colors represent sites located in one of ...
<p>The first (outer) circle represents the human chromosome. From the second to the inner, circles h...
<p>Illustrations showing genomic context and individual CpG methylation levels at three separate MPR...
<p>(A) Pairwise plots of CG (left), CHG (middle), and CHH (right) methylation levels (Y-axis, D homo...
<p>Positions of DNA methylation and gene expression assays are also shown. Black circles denote DNA ...
<p>(A) Graphical explanation of how the distribution of M-scores and IQR are transformed into violin...
<p>The heat map of these genes shows different methylation between tumor tissues and normal tissues....
<p>(A) Percentage of DMRs in TE (brown), intergenic region (green), exon (dark yellow) and intron (b...
<p>The frequency of samples with gains (red) and losses (green) is shown at the top. Each gray point...
<p>Table with six genes per tissue highlighting the tissue specificity of the genes found near dDMRs...
<p>y-axis: number of changed genes, x-axis: chromosomal position. The arrow indicates the location o...
<p>The chromosomal number and relative size are presented. The DMR (arrow), gene expression changes ...
<p>This demonstrates the first exons of either the <i>VHL</i> gene (A) or the <i>SFRP1</i> gene (B) ...
<p>Genomic regions enriched with downregulated genes affected by promoter hypermethylation.</p
<p>(B) The Correlation Maps app on the USeq platform was used to locate any specific chromosomal enr...