FinalOutput_Breast

Forest plots of RRs for the association between different intrinsic subtypes and distant disease-free survival in pT1a-bN0M0 breast cancer patients.

Qiong Zhou (169101)
Wenjin Yin (218229)
Yueyao Du (330840)
Jinsong Lu (218242)

January 2014

The size of the square box is proportional to the weight that each study contributes in the meta-...

Breast cancer intrinsic subtypes: a critical conception in bioinformatics

Milioli, Heloisa Helena

January 2017

Research Doctorate - Doctor of Philosophy (PhD)Breast cancers have been uncovered by high-throughput...

Agreement in Breast Cancer Classification between Microarray and Quantitative Reverse Transcription PCR from Fresh-Frozen and Formalin-Fixed, Paraffin-Embedded Tissues

Philip S. Bernard

February 2015

ent molecular subtypes of breast cancer with prognostic significance. To transition these classifica...

FinalOutput_Breast

Beck, Andrew H.
Knoblauch, Nicholas W.
Hefti, Marco M.
Kaplan, Jennifer
Schnitt, Stuart J.
Culhane, Aedin C.
Schroeder, Markus S.
Quackenbush, John
Haibe-Kains, Benjamin

January 2013

FinalOutput_Breast.RData contains the results from the subtype-specific analysis in breast cancer, i...

FinalOutput_Ovary

Beck, Andrew H.
Knoblauch, Nicholas W.
Hefti, Marco M.
Kaplan, Jennifer
Schnitt, Stuart J.
Culhane, Aedin C.
Schroeder, Markus S.
Quackenbush, John
Haibe-Kains, Benjamin

January 2013

FinalOutput_Ovary.RData contains the results from the traditional scaled data set in ovarian cancer,...

Breast.Ps.OnPermutedData.RData

Andrew H. Beck (254596)
Nicholas W. Knoblauch (276487)
Marco M. Hefti (276488)
Jennifer Kaplan (276489)
Stuart J. Schnitt (276490)
Aedin C. Culhane (276491)
Markus S. Schroeder (276492)
John Quackenbush (1213)
Benjamin Haibe-Kains (183845)

October 2016

Breast.Ps.OnPermutedData.RData contains the results of performing SAPS using permuted gene sets on t...

BreastOutput_SubScaled

Andrew H. Beck (254596)
Nicholas W. Knoblauch (276487)
Marco M. Hefti (276488)
Jennifer Kaplan (276489)
Stuart J. Schnitt (276490)
Aedin C. Culhane (276491)
Markus S. Schroeder (276492)
John Quackenbush (1213)
Benjamin Haibe-Kains (183845)

October 2016

BreastOutput_SubScaled.RData is an R-workspace contains the objects: allPs, allPs.adj, sumTable. The...

BreastOutput_TradScaled

Beck, Andrew H.
Knoblauch, Nicholas W.
Hefti, Marco M.
Kaplan, Jennifer
Schnitt, Stuart J.
Culhane, Aedin C.
Schroeder, Markus S.
Quackenbush, John
Haibe-Kains, Benjamin

January 2013

BreastOutput_TradScaled.RData is an R-workspace contains the objects: allPs, allPs.adj, sumTable. Th...

OvaryOutput_TradScaled

Beck, Andrew H.
Knoblauch, Nicholas W.
Hefti, Marco M.
Kaplan, Jennifer
Schnitt, Stuart J.
Culhane, Aedin C.
Schroeder, Markus S.
Quackenbush, John
Haibe-Kains, Benjamin

January 2013

OvaryOutput_TradScaled.RData contains the objects: allPs, allPs.adj, sumTable.BreastOutput_TradScale...

Results of fQTL analysis applied to all breast tumor and adjacent normal samples.

Alejandro Quiroz-Zárate (3712624)
Benjamin J. Harshfield (3712618)
Rong Hu (153724)
Nick Knoblauch (3712621)
Andrew H. Beck (254596)
Susan E. Hankinson (89927)
Vincent Carey (588798)
Rulla M. Tamimi (437781)
David J. Hunter (50227)
John Quackenbush (1213)
Aditi Hazra (269373)

February 2017

Results of fQTL analysis applied to all breast tumor and adjacent normal samples.</p

Tumor-RNA-RData

Shuang Zhang (14668787)

February 2023

Seurat object & markers for each cluster (stored in .RData), and relevant meta data( including cell ...

Ovary.Ps.OnPermutedData.RData

Beck, Andrew H.
Knoblauch, Nicholas W.
Hefti, Marco M.
Kaplan, Jennifer
Schnitt, Stuart J.
Culhane, Aedin C.
Schroeder, Markus S.
Quackenbush, John
Haibe-Kains, Benjamin

January 2013

ReadMe, Ovary.Ps.OnPermutedData.RData. Ovary.Ps.OnPermutedData.RData contains the results of perform...

Comparative analysis of drug response significance across breast cancer subtypes by PAM50 classification.

Musalula Sinkala (6873695)
Krupa Naran (2003668)
Dharanidharan Ramamurthy (399698)
Neelakshi Mungra (14438711)
Kevin Dzobo (6492500)
Darren Martin (2142325)
Stefan Barth (7114)

February 2024

The colours show the degree of statistical significance (i.e., p values), with redder colours denoti...

BreastSubtypeSpecScaleRankDir

Beck, Andrew H.
Knoblauch, Nicholas W.
Hefti, Marco M.
Kaplan, Jennifer
Schnitt, Stuart J.
Culhane, Aedin C.
Schroeder, Markus S.
Quackenbush, John
Haibe-Kains, Benjamin

January 2013

BreastSubtypeSpecScaleRankDir contains the ranked gene lists of concordance indices used to perform ...

Breast Cancer Consensus Subtypes: A system for subtyping breast cancer tumors based on gene expression

Christina Horr
Steven A. Buechler

October 2021

Abstract Breast cancer is heterogeneous in prognoses and drug responses. To organize breast cancers ...

Forest plots of RRs for the association between different intrinsic subtypes and distant disease-free survival in pT1a-bN0M0 breast cancer patients.

Qiong Zhou (169101)
Wenjin Yin (218229)
Yueyao Du (330840)
Jinsong Lu (218242)

January 2014

The size of the square box is proportional to the weight that each study contributes in the meta-...

Breast cancer intrinsic subtypes: a critical conception in bioinformatics

Milioli, Heloisa Helena

January 2017

Research Doctorate - Doctor of Philosophy (PhD)Breast cancers have been uncovered by high-throughput...

Agreement in Breast Cancer Classification between Microarray and Quantitative Reverse Transcription PCR from Fresh-Frozen and Formalin-Fixed, Paraffin-Embedded Tissues

Philip S. Bernard

February 2015

ent molecular subtypes of breast cancer with prognostic significance. To transition these classifica...

FinalOutput_Breast

Beck, Andrew H.
Knoblauch, Nicholas W.
Hefti, Marco M.
Kaplan, Jennifer
Schnitt, Stuart J.
Culhane, Aedin C.
Schroeder, Markus S.
Quackenbush, John
Haibe-Kains, Benjamin

January 2013

FinalOutput_Breast.RData contains the results from the subtype-specific analysis in breast cancer, i...

FinalOutput_Ovary

Beck, Andrew H.
Knoblauch, Nicholas W.
Hefti, Marco M.
Kaplan, Jennifer
Schnitt, Stuart J.
Culhane, Aedin C.
Schroeder, Markus S.
Quackenbush, John
Haibe-Kains, Benjamin

January 2013

FinalOutput_Ovary.RData contains the results from the traditional scaled data set in ovarian cancer,...

Breast.Ps.OnPermutedData.RData

Andrew H. Beck (254596)
Nicholas W. Knoblauch (276487)
Marco M. Hefti (276488)
Jennifer Kaplan (276489)
Stuart J. Schnitt (276490)
Aedin C. Culhane (276491)
Markus S. Schroeder (276492)
John Quackenbush (1213)
Benjamin Haibe-Kains (183845)

October 2016

Breast.Ps.OnPermutedData.RData contains the results of performing SAPS using permuted gene sets on t...

BreastOutput_SubScaled

Andrew H. Beck (254596)
Nicholas W. Knoblauch (276487)
Marco M. Hefti (276488)
Jennifer Kaplan (276489)
Stuart J. Schnitt (276490)
Aedin C. Culhane (276491)
Markus S. Schroeder (276492)
John Quackenbush (1213)
Benjamin Haibe-Kains (183845)

October 2016

BreastOutput_SubScaled.RData is an R-workspace contains the objects: allPs, allPs.adj, sumTable. The...

BreastOutput_TradScaled

Beck, Andrew H.
Knoblauch, Nicholas W.
Hefti, Marco M.
Kaplan, Jennifer
Schnitt, Stuart J.
Culhane, Aedin C.
Schroeder, Markus S.
Quackenbush, John
Haibe-Kains, Benjamin

January 2013

BreastOutput_TradScaled.RData is an R-workspace contains the objects: allPs, allPs.adj, sumTable. Th...

OvaryOutput_TradScaled

Beck, Andrew H.
Knoblauch, Nicholas W.
Hefti, Marco M.
Kaplan, Jennifer
Schnitt, Stuart J.
Culhane, Aedin C.
Schroeder, Markus S.
Quackenbush, John
Haibe-Kains, Benjamin

January 2013

OvaryOutput_TradScaled.RData contains the objects: allPs, allPs.adj, sumTable.BreastOutput_TradScale...

Results of fQTL analysis applied to all breast tumor and adjacent normal samples.

Alejandro Quiroz-Zárate (3712624)
Benjamin J. Harshfield (3712618)
Rong Hu (153724)
Nick Knoblauch (3712621)
Andrew H. Beck (254596)
Susan E. Hankinson (89927)
Vincent Carey (588798)
Rulla M. Tamimi (437781)
David J. Hunter (50227)
John Quackenbush (1213)
Aditi Hazra (269373)

February 2017

Results of fQTL analysis applied to all breast tumor and adjacent normal samples.</p

Tumor-RNA-RData

Shuang Zhang (14668787)

February 2023

Seurat object & markers for each cluster (stored in .RData), and relevant meta data( including cell ...

Ovary.Ps.OnPermutedData.RData

Beck, Andrew H.
Knoblauch, Nicholas W.
Hefti, Marco M.
Kaplan, Jennifer
Schnitt, Stuart J.
Culhane, Aedin C.
Schroeder, Markus S.
Quackenbush, John
Haibe-Kains, Benjamin

January 2013

ReadMe, Ovary.Ps.OnPermutedData.RData. Ovary.Ps.OnPermutedData.RData contains the results of perform...

Comparative analysis of drug response significance across breast cancer subtypes by PAM50 classification.

Musalula Sinkala (6873695)
Krupa Naran (2003668)
Dharanidharan Ramamurthy (399698)
Neelakshi Mungra (14438711)
Kevin Dzobo (6492500)
Darren Martin (2142325)
Stefan Barth (7114)

February 2024

The colours show the degree of statistical significance (i.e., p values), with redder colours denoti...

BreastSubtypeSpecScaleRankDir

Beck, Andrew H.
Knoblauch, Nicholas W.
Hefti, Marco M.
Kaplan, Jennifer
Schnitt, Stuart J.
Culhane, Aedin C.
Schroeder, Markus S.
Quackenbush, John
Haibe-Kains, Benjamin

January 2013

BreastSubtypeSpecScaleRankDir contains the ranked gene lists of concordance indices used to perform ...

Breast Cancer Consensus Subtypes: A system for subtyping breast cancer tumors based on gene expression

Christina Horr
Steven A. Buechler

October 2021

Abstract Breast cancer is heterogeneous in prognoses and drug responses. To organize breast cancers ...

Forest plots of RRs for the association between different intrinsic subtypes and distant disease-free survival in pT1a-bN0M0 breast cancer patients.

Qiong Zhou (169101)
Wenjin Yin (218229)
Yueyao Du (330840)
Jinsong Lu (218242)

January 2014

The size of the square box is proportional to the weight that each study contributes in the meta-...

Breast cancer intrinsic subtypes: a critical conception in bioinformatics

Milioli, Heloisa Helena

January 2017

Research Doctorate - Doctor of Philosophy (PhD)Breast cancers have been uncovered by high-throughput...

Agreement in Breast Cancer Classification between Microarray and Quantitative Reverse Transcription PCR from Fresh-Frozen and Formalin-Fixed, Paraffin-Embedded Tissues

Philip S. Bernard

February 2015

ent molecular subtypes of breast cancer with prognostic significance. To transition these classifica...

FinalOutput_Breast

Abstract

Extracted data

FinalOutput_Breast

Abstract

Extracted data

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