<p>(a) Average absolute difference in gene expression for TE− genes (yellow), InvTE+ genes (cyan) and VarTE+ (navy) genes. MWU p[TE−/TE+]<2×10<sup>−16</sup>, p[InvTE+/VarTE+] = 2×10<sup>−5</sup>. Expression divergence is also shown for InvTE+ genes divided by whether the proximal TEs are invariably (orange) or variably (red) targeted by siRNA. (b) TE− genes (yellow), InvTE+ (cyan) genes and VarTE+ (navy) genes were divided into subgroups depending on their polymorphism levels. Genes were binned by polymorphism levels into 0–2%, 2–4% and >4% groups. The average absolute change in expression level for each subgroup of genes is shown. ** = p<0.01. Standard errors are shown.</p
Transposable elements (TEs) make up the majority of many plant genomes. Their transcription and tran...
RNA-Seq coverage maps of complex operon/regulon including the TSSs in green and TTSs in red. Size of...
<p>Genes whose expression levels were commonly altered among R200#1, R200#8, and R200#11 cells compa...
<p>(a) Gene polymorphism levels in Bur-0 and C24 for TE− genes (yellow) vs TE+ genes (red). MWU p<2×...
<p>(a) Average gene expression levels for TE− genes (yellow), TE+ genes (red) and genes where TEs ar...
<p>(a) Average distance of siRNA− (red) and siRNA+ (yellow) proximal TEs to the nearest gene. For si...
<p>(A). Normalized (per 1 million mappers) piRNA abundance +0.1 (log 10) in the strain 9 germline vs...
<p>1. Median for the differences in expression rank between alleles with and without TEs. Rank diffe...
<p><b>(A)</b> Correlation between interspecies expression differences and either H3K9ac (<i>red</i>)...
<p>A: Differentially expressed genes at FDR 0.05 (highlighted in red) between non-involuted and invo...
<p>(a) TE variation between Col-0 and Bur-0 or C24, calculated as the percentage of total TE length ...
<p><b>A.</b>The distribution for the coefficient of variation (CV) of the estimated TE for all genes...
<p>The percentage of clusters of siRNA from protein-coding genes classified into mid-parent (additiv...
<p>The numbers on the top represent fibers at 0 DPA, 5 DPA, 10 DPA, 15 DPA, 20 DPA, and 25 DPA for E...
Differences in the expression level of three gene groups with different types of uAUG motif.</p
Transposable elements (TEs) make up the majority of many plant genomes. Their transcription and tran...
RNA-Seq coverage maps of complex operon/regulon including the TSSs in green and TTSs in red. Size of...
<p>Genes whose expression levels were commonly altered among R200#1, R200#8, and R200#11 cells compa...
<p>(a) Gene polymorphism levels in Bur-0 and C24 for TE− genes (yellow) vs TE+ genes (red). MWU p<2×...
<p>(a) Average gene expression levels for TE− genes (yellow), TE+ genes (red) and genes where TEs ar...
<p>(a) Average distance of siRNA− (red) and siRNA+ (yellow) proximal TEs to the nearest gene. For si...
<p>(A). Normalized (per 1 million mappers) piRNA abundance +0.1 (log 10) in the strain 9 germline vs...
<p>1. Median for the differences in expression rank between alleles with and without TEs. Rank diffe...
<p><b>(A)</b> Correlation between interspecies expression differences and either H3K9ac (<i>red</i>)...
<p>A: Differentially expressed genes at FDR 0.05 (highlighted in red) between non-involuted and invo...
<p>(a) TE variation between Col-0 and Bur-0 or C24, calculated as the percentage of total TE length ...
<p><b>A.</b>The distribution for the coefficient of variation (CV) of the estimated TE for all genes...
<p>The percentage of clusters of siRNA from protein-coding genes classified into mid-parent (additiv...
<p>The numbers on the top represent fibers at 0 DPA, 5 DPA, 10 DPA, 15 DPA, 20 DPA, and 25 DPA for E...
Differences in the expression level of three gene groups with different types of uAUG motif.</p
Transposable elements (TEs) make up the majority of many plant genomes. Their transcription and tran...
RNA-Seq coverage maps of complex operon/regulon including the TSSs in green and TTSs in red. Size of...
<p>Genes whose expression levels were commonly altered among R200#1, R200#8, and R200#11 cells compa...