Ask
Search
My library
ORKG

ORKG Ask

Our mission is to organize scholarly knowledge and make it accessible to humans and machines.

About

About ORKG Ask
Report issue
Statistics
Contact

Legal

Terms of use
Data protection (sheet)
Imprint
Accessibility
License

Technical

We
open source
System status
Changelog
Frontend: v1.41.0
Backend: v1.13.4

We use cookies to provide a better user experience.

Data Protection

Ingenuity Pathway analysis (IPA) performed on 31 listed genes.

Bing Dai (171560)
Valentin David (306497)
Aline Martin (308465)
Jinsong Huang (308466)
Hua Li (46469)
Yan Jiao (308467)
Weikuan Gu (308468)
L. Darryl Quarles (308469)

Publication date

February 2013

DOI

10.1371/journal.pone.0044161.g006

Abstract

<p>The network is built according the identified interconnected pathways involving the highest majority of genes. Genes represented in pink color belong to the cluster. Genes represented in bold font are central regulators of the identified pathways that do not belong to the cluster. Genes represented in white color are other intermediary regulators that do not belong to the cluster.</p

Extracted data

Related items

Ingenuity pathway analysis Network #2.

Chloe M. McCoy (154721)
Dylan Q. Nicholas (154723)
Kristyn S. Masters (154726)

July 2012

<p>Ingenuity pathway analysis was used to assemble a network based upon 20 differentially expressed ...

Gene-expression regulatory networks of breast cancer chemoresistance.

Laura Vera-Ramirez (103805)
Pedro Sanchez-Rovira (103806)
Cesar L. Ramirez-Tortosa (103808)
Jose L. Quiles (103810)
MCarmen Ramirez-Tortosa (103813)
Jose A. Lorente (103815)

January 2013

<p>Pathway analysis by IPA software based on the Chemoresistance dataset and gene lists related to A...

Six of the nine networks found by IPA.

Natasa Rajicic (240396)
Joseph Cuschieri (358621)
Dianne M. Finkelstein (358622)
Carol L. Miller-Graziano (358623)
Douglas Hayden (358624)
Lyle L. Moldawer (358625)
Ernest Moore (358626)
Grant O'Keefe (358627)
Kimberly Pelik (358629)
H. Shaw Warren (358630)
David A. Schoenfeld (358631)

February 2013

<p>Legend: Six of the nine genomic networks found by importing the 170 probe-sets into the Ingenuity...

Ingenuity Pathway Analysis (IPA) of differentially expressed genes.

Kunal B. Shah (217221)
Sudeshna Tripathy (611169)
Hepziba Suganthi (611170)
Medhamurthy Rudraiah (217228)

August 2014

<p>(A) The pathway analysis indicated that a large number of differentially expressed genes belong t...

Ingenuity Pathway analysis (IPA)-Top regulatory networks representing genes involved in cellular assembly and organization.

Anthony A. Portale (453176)
Martin Y. H. Zhang (453172)
Valentin David (306497)
Aline Martin (308465)
Yan Jiao (308467)
Weikuan Gu (308468)
Farzana Perwad (453177)

November 2015

<p><i>A</i>. Network of common genes found in CHIP-seq and microarray datasets. Ubiquitin C (UBC) sh...

Ingenuity Pathway Analysis (IPA) of the 16 genes most highly up-regulated in microarray analysis.

Dhriti Chatterjee (652468)
Sankar Addya (127326)
Reas S. Khan (652469)
Lawrence C. Kenyon (652470)
Alexander Choe (652471)
Randall J. Cohrs (440440)
Kenneth S. Shindler (652472)
Jayasri Das Sarma (652473)

October 2014

<p>A, Functional network showing the direct and indirect relationships that exist between these mole...

Illustration of the top gene network upregulated in the environmentally enriched (A) and control (B) groups.

Léa Lansade (317900)
Mathilde Valenchon (405844)
Aline Foury (672540)
Claire Neveux (672541)
Steve W. Cole (672542)
Sophie Layé (162845)
Bruno Cardinaud (138009)
Frédéric Lévy (365696)
Marie-Pierre Moisan (672543)

December 2014

<p>These data were generated by the Ingenuity Pathway Analysis (IPA) software using the 400 genes di...

Pathogenic and non-pathogenic specific networks.

Jay Zhang (422679)

June 2013

<p>Ingenuity Pathway Analysis (IPA) identified two top-scoring networks from genes with a ≥2 fold in...

Ingenuity Pathways Analysis (IPA) summary of up regulated genes in SK-NEP-1 cells treated with LBH589.

Tao Yan-Fang (770096)
Li Zhi-Heng (770097)
Xu Li-Xiao (770098)
Fang Fang (38179)
Lu Jun (770099)
Li Gang (770100)
Cao Lan (770101)
Wang Na-Na (770102)
Du Xiao-Juan (770103)
Sun Li-Chao (770104)
Zhao Wen-Li (770105)
Xiao Pei-Fang (770106)
Zhao He (133100)
Su Guang-Hao (770107)
Li Yan-Hong (770108)
Li Yi-Ping (770109)
Xu Yun-Yun (770110)
Zhou Hui-Ting (770111)
Wu Yi (770112)
Jin Mei-Fang (770113)
Liu Lin (696224)
Ni Jian (770114)
Hu Shao-Yan (770115)
Zhu Xue-Ming (770116)
Feng Xing (513672)
Wang Jian (205162)
Pan Jian (770117)

July 2015

<p>To investigate possible interactions of differently regulated genes, datasets representing up reg...

Ingenuity Pathway Analysis showing top diseases and biological functions of differentially expressed genes.

Mingyan Lin (139065)
Dejian Zhao (552133)
Anastasia Hrabovsky (139067)
Erika Pedrosa (139072)
Deyou Zheng (7943)
Herbert M. Lachman (139079)

April 2014

<p>All genes that were significant at a p<0.05 level were subjected to pathway analysis (Ingenuity P...

Ingenuity pathway analysis Network #1.

Chloe M. McCoy (154721)
Dylan Q. Nicholas (154723)
Kristyn S. Masters (154726)

July 2012

<p>Ingenuity pathway analysis was used to assemble a network based upon 22 differentially expressed ...

Representative canonical pathways study using the ingenuity pathway analysis (IPA) tool.

Jose Rojas-Caraballo (615663)
Julio López-Abán (134057)
Pedro Fernández-Soto (403075)
Belén Vicente (615664)
Francisco Collía (780776)
Antonio Muro (134062)

August 2015

<p>(A) A comparison of the numbers of pathways that are statistically significant is shown for each ...

Ingenuity Pathway Analysis summary.

Jeroen P. Vanderhoeven (531499)
Craig J. Bierle (531500)
Raj P. Kapur (128423)
Ryan M. McAdams (128412)
Richard P. Beyer (128416)
Theo K. Bammler (128417)
Federico M. Farin (128418)
Aasthaa Bansal (337048)
Min Spencer (531501)
Mei Deng (460870)
Michael G. Gravett (128428)
Craig E. Rubens (128433)
Lakshmi Rajagopal (247524)
Kristina M. Adams Waldorf (128438)

March 2014

<p>*The Functional Analysis of a Network identified biological functions and/or diseases that were m...

Ingenuity Pathway Analysis Summary.

Ryan M. McAdams (128412)
Jeroen Vanderhoeven (128414)
Richard P. Beyer (128416)
Theo K. Bammler (128417)
Federico M. Farin (128418)
H. Denny Liggitt (128420)
Raj P. Kapur (128423)
Michael G. Gravett (128428)
Craig E. Rubens (128433)
Kristina M. Adams Waldorf (128438)

October 2012

*<p>The Functional Analysis of a Network identified biological functions and/or diseases that were m...

Ingenuity network 1.

Malin Östensson (440869)
Caroline Montén (440870)
Jonas Bacelis (440871)
Audur H. Gudjonsdottir (440872)
Svetlana Adamovic (440873)
Johan Ek (440874)
Henry Ascher (440875)
Elisabet Pollak (440876)
Henrik Arnell (440877)
Lars Browaldh (440878)
Daniel Agardh (440879)
Jan Wahlström (440880)
Staffan Nilsson (112787)
Åsa Torinsson-Naluai (440881)

August 2013

<p>The top network identified by the Ingenuity IPA software using genes surrounding all 603 most ass...

Ingenuity pathway analysis Network #2.

Chloe M. McCoy (154721)
Dylan Q. Nicholas (154723)
Kristyn S. Masters (154726)

July 2012

<p>Ingenuity pathway analysis was used to assemble a network based upon 20 differentially expressed ...

Gene-expression regulatory networks of breast cancer chemoresistance.

Laura Vera-Ramirez (103805)
Pedro Sanchez-Rovira (103806)
Cesar L. Ramirez-Tortosa (103808)
Jose L. Quiles (103810)
MCarmen Ramirez-Tortosa (103813)
Jose A. Lorente (103815)

January 2013

<p>Pathway analysis by IPA software based on the Chemoresistance dataset and gene lists related to A...

Six of the nine networks found by IPA.

Natasa Rajicic (240396)
Joseph Cuschieri (358621)
Dianne M. Finkelstein (358622)
Carol L. Miller-Graziano (358623)
Douglas Hayden (358624)
Lyle L. Moldawer (358625)
Ernest Moore (358626)
Grant O'Keefe (358627)
Kimberly Pelik (358629)
H. Shaw Warren (358630)
David A. Schoenfeld (358631)

February 2013

<p>Legend: Six of the nine genomic networks found by importing the 170 probe-sets into the Ingenuity...

Ingenuity Pathway Analysis (IPA) of differentially expressed genes.

Kunal B. Shah (217221)
Sudeshna Tripathy (611169)
Hepziba Suganthi (611170)
Medhamurthy Rudraiah (217228)

August 2014

<p>(A) The pathway analysis indicated that a large number of differentially expressed genes belong t...

Ingenuity Pathway analysis (IPA)-Top regulatory networks representing genes involved in cellular assembly and organization.

Anthony A. Portale (453176)
Martin Y. H. Zhang (453172)
Valentin David (306497)
Aline Martin (308465)
Yan Jiao (308467)
Weikuan Gu (308468)
Farzana Perwad (453177)

November 2015

<p><i>A</i>. Network of common genes found in CHIP-seq and microarray datasets. Ubiquitin C (UBC) sh...

Ingenuity Pathway Analysis (IPA) of the 16 genes most highly up-regulated in microarray analysis.

Dhriti Chatterjee (652468)
Sankar Addya (127326)
Reas S. Khan (652469)
Lawrence C. Kenyon (652470)
Alexander Choe (652471)
Randall J. Cohrs (440440)
Kenneth S. Shindler (652472)
Jayasri Das Sarma (652473)

October 2014

<p>A, Functional network showing the direct and indirect relationships that exist between these mole...

Illustration of the top gene network upregulated in the environmentally enriched (A) and control (B) groups.

Léa Lansade (317900)
Mathilde Valenchon (405844)
Aline Foury (672540)
Claire Neveux (672541)
Steve W. Cole (672542)
Sophie Layé (162845)
Bruno Cardinaud (138009)
Frédéric Lévy (365696)
Marie-Pierre Moisan (672543)

December 2014

<p>These data were generated by the Ingenuity Pathway Analysis (IPA) software using the 400 genes di...

Pathogenic and non-pathogenic specific networks.

Jay Zhang (422679)

June 2013

<p>Ingenuity Pathway Analysis (IPA) identified two top-scoring networks from genes with a ≥2 fold in...

Ingenuity Pathways Analysis (IPA) summary of up regulated genes in SK-NEP-1 cells treated with LBH589.

Tao Yan-Fang (770096)
Li Zhi-Heng (770097)
Xu Li-Xiao (770098)
Fang Fang (38179)
Lu Jun (770099)
Li Gang (770100)
Cao Lan (770101)
Wang Na-Na (770102)
Du Xiao-Juan (770103)
Sun Li-Chao (770104)
Zhao Wen-Li (770105)
Xiao Pei-Fang (770106)
Zhao He (133100)
Su Guang-Hao (770107)
Li Yan-Hong (770108)
Li Yi-Ping (770109)
Xu Yun-Yun (770110)
Zhou Hui-Ting (770111)
Wu Yi (770112)
Jin Mei-Fang (770113)
Liu Lin (696224)
Ni Jian (770114)
Hu Shao-Yan (770115)
Zhu Xue-Ming (770116)
Feng Xing (513672)
Wang Jian (205162)
Pan Jian (770117)

July 2015

<p>To investigate possible interactions of differently regulated genes, datasets representing up reg...

Ingenuity Pathway Analysis showing top diseases and biological functions of differentially expressed genes.

Mingyan Lin (139065)
Dejian Zhao (552133)
Anastasia Hrabovsky (139067)
Erika Pedrosa (139072)
Deyou Zheng (7943)
Herbert M. Lachman (139079)

April 2014

<p>All genes that were significant at a p<0.05 level were subjected to pathway analysis (Ingenuity P...

Ingenuity pathway analysis Network #1.

Chloe M. McCoy (154721)
Dylan Q. Nicholas (154723)
Kristyn S. Masters (154726)

July 2012

<p>Ingenuity pathway analysis was used to assemble a network based upon 22 differentially expressed ...

Representative canonical pathways study using the ingenuity pathway analysis (IPA) tool.

Jose Rojas-Caraballo (615663)
Julio López-Abán (134057)
Pedro Fernández-Soto (403075)
Belén Vicente (615664)
Francisco Collía (780776)
Antonio Muro (134062)

August 2015

<p>(A) A comparison of the numbers of pathways that are statistically significant is shown for each ...

Ingenuity Pathway Analysis summary.

Jeroen P. Vanderhoeven (531499)
Craig J. Bierle (531500)
Raj P. Kapur (128423)
Ryan M. McAdams (128412)
Richard P. Beyer (128416)
Theo K. Bammler (128417)
Federico M. Farin (128418)
Aasthaa Bansal (337048)
Min Spencer (531501)
Mei Deng (460870)
Michael G. Gravett (128428)
Craig E. Rubens (128433)
Lakshmi Rajagopal (247524)
Kristina M. Adams Waldorf (128438)

March 2014

<p>*The Functional Analysis of a Network identified biological functions and/or diseases that were m...

Ingenuity Pathway Analysis Summary.

Ryan M. McAdams (128412)
Jeroen Vanderhoeven (128414)
Richard P. Beyer (128416)
Theo K. Bammler (128417)
Federico M. Farin (128418)
H. Denny Liggitt (128420)
Raj P. Kapur (128423)
Michael G. Gravett (128428)
Craig E. Rubens (128433)
Kristina M. Adams Waldorf (128438)

October 2012

*<p>The Functional Analysis of a Network identified biological functions and/or diseases that were m...

Ingenuity network 1.

Malin Östensson (440869)
Caroline Montén (440870)
Jonas Bacelis (440871)
Audur H. Gudjonsdottir (440872)
Svetlana Adamovic (440873)
Johan Ek (440874)
Henry Ascher (440875)
Elisabet Pollak (440876)
Henrik Arnell (440877)
Lars Browaldh (440878)
Daniel Agardh (440879)
Jan Wahlström (440880)
Staffan Nilsson (112787)
Åsa Torinsson-Naluai (440881)

August 2013

<p>The top network identified by the Ingenuity IPA software using genes surrounding all 603 most ass...

Ingenuity pathway analysis Network #2.

Chloe M. McCoy (154721)
Dylan Q. Nicholas (154723)
Kristyn S. Masters (154726)

July 2012

<p>Ingenuity pathway analysis was used to assemble a network based upon 20 differentially expressed ...

Gene-expression regulatory networks of breast cancer chemoresistance.

Laura Vera-Ramirez (103805)
Pedro Sanchez-Rovira (103806)
Cesar L. Ramirez-Tortosa (103808)
Jose L. Quiles (103810)
MCarmen Ramirez-Tortosa (103813)
Jose A. Lorente (103815)

January 2013

<p>Pathway analysis by IPA software based on the Chemoresistance dataset and gene lists related to A...

Six of the nine networks found by IPA.

Natasa Rajicic (240396)
Joseph Cuschieri (358621)
Dianne M. Finkelstein (358622)
Carol L. Miller-Graziano (358623)
Douglas Hayden (358624)
Lyle L. Moldawer (358625)
Ernest Moore (358626)
Grant O'Keefe (358627)
Kimberly Pelik (358629)
H. Shaw Warren (358630)
David A. Schoenfeld (358631)

February 2013

<p>Legend: Six of the nine genomic networks found by importing the 170 probe-sets into the Ingenuity...