<p>RMSD values for free enzyme (black curve), αTh-PPACK (red curve), secondary structure deviation in free αTh (green curve) and in complexed αTh (blue curve), for light chain (“L”, panel <b>A</b>) and heavy chain (“H”, panel <b>B</b>); (<b>C</b>) H-bonds formed between coil-surrounded PPACK site in free αTh (black curve) and complexed form (red curve); (<b>D</b>) Total intramolecular H-bonds formed between residues for free αTh (black curve) and complexed αTh (red curve). Details in the <i>Experimental Methods</i> section.</p
<p>The central line represents the residue index. Rectangles along the line represent α-helices. Rec...
<p>(A) The potential energy plots showing the relatively stable complex system. (B) RMSD plot repres...
<p>For the complexes, the corresponding ligand RMSD-values are depicted as green curves.</p
<p>Root-mean-square deviations (RMSD) of the Cα atoms (from their positions in the energy minimized ...
(A) Combined radius of gyration (RG) plot of βManAo and βManAo-M3 at 310.15 K, (B)Time dependent bac...
<p>(A) Change in RMSD of αCTD (cyan dots) and βCTD (black dots) for all TMD simulations as a functio...
(A) The number of contacts between the hydrogen bond donors in the QGR motif and hydrogen bond accep...
<p>(A) RMSFs as calculated from MD simulations for MHC and peptide residues (inset). Only positions ...
<p>(A) A representative active-site structure along with the average values of some structural param...
<p>Partial RMSD evaluated after structure alignment over the backbone atoms of protein core residues...
<p>(A) A representative active-site structure along with the average values of some structural param...
<p>Left: GluK2-<i>trans</i> complex; right: GluK2-<i>cis</i> complex. Data obtained from five indepe...
<p>The Comparative diagram for various calculations of Backbone RMSD by regarding N-domain, C-domain...
<p>The interaction energy is accounting the interaction energy between the kinase and pseudokinase d...
<p>(A) RMSD<sub>Cα</sub> of sampled conformations during five cMD simulations with different atomic ...
<p>The central line represents the residue index. Rectangles along the line represent α-helices. Rec...
<p>(A) The potential energy plots showing the relatively stable complex system. (B) RMSD plot repres...
<p>For the complexes, the corresponding ligand RMSD-values are depicted as green curves.</p
<p>Root-mean-square deviations (RMSD) of the Cα atoms (from their positions in the energy minimized ...
(A) Combined radius of gyration (RG) plot of βManAo and βManAo-M3 at 310.15 K, (B)Time dependent bac...
<p>(A) Change in RMSD of αCTD (cyan dots) and βCTD (black dots) for all TMD simulations as a functio...
(A) The number of contacts between the hydrogen bond donors in the QGR motif and hydrogen bond accep...
<p>(A) RMSFs as calculated from MD simulations for MHC and peptide residues (inset). Only positions ...
<p>(A) A representative active-site structure along with the average values of some structural param...
<p>Partial RMSD evaluated after structure alignment over the backbone atoms of protein core residues...
<p>(A) A representative active-site structure along with the average values of some structural param...
<p>Left: GluK2-<i>trans</i> complex; right: GluK2-<i>cis</i> complex. Data obtained from five indepe...
<p>The Comparative diagram for various calculations of Backbone RMSD by regarding N-domain, C-domain...
<p>The interaction energy is accounting the interaction energy between the kinase and pseudokinase d...
<p>(A) RMSD<sub>Cα</sub> of sampled conformations during five cMD simulations with different atomic ...
<p>The central line represents the residue index. Rectangles along the line represent α-helices. Rec...
<p>(A) The potential energy plots showing the relatively stable complex system. (B) RMSD plot repres...
<p>For the complexes, the corresponding ligand RMSD-values are depicted as green curves.</p