<p>Partial RMSD evaluated after structure alignment over the backbone atoms of protein core residues. RMSD values for the helices H1 to H9, the -strands to , and the loops L1, L2, and L3 between the most representative structure of the MD-NMR trajectory and the corresponding initial structure. and are sub-structures of the L1 and L2 segments respectively.</p
<p>Left: GluK2-<i>trans</i> complex; right: GluK2-<i>cis</i> complex. Data obtained from five indepe...
<p>Proteins Cα (A), heavy atoms of NADPH cofactor (B) and substrate cortisone (C) are plotted as fun...
<p>a) RMSD values between initial (PREDDIMER predicted) structures across the subfamily of plexins c...
<p>Gray line: RMSD evaluated along the 250 ns of the MD-XR trajectory. Orange: RMSD evaluated along ...
<p>Prior to the RMSD calculation of each pair, the structures were aligned, taking into consideratio...
<p>We generated samples for each loop. The mean value of the minimum RMSD of the loops (-axis) is ...
<p>In (A), RMSD values from the whole construct (NS3<sub>PRO</sub> F, black line) were compared with...
<p>The Comparative diagram for various calculations of Backbone RMSD by regarding N-domain, C-domain...
<p>RMSD values of the backbone atoms relative to the initial minimized structures as functions of si...
<p>(A) is the D1-D2 domain, (B) the D3 domain and (C) heavy atoms of the ligands. The initial confor...
<p>Blue: RMSD values of the 20 homology models versus each other; Green: RMSD values of the 20 NMR s...
<p>For the complexes, the corresponding ligand RMSD-values are depicted as green curves.</p
<p>For each simulation, the heavy-atom RMSDs for the EL4 and IL2 loops and the entire protein with r...
*<p>RMSD based on residues 226–326 of <i>B2PilQ<sup>224–329</sup></i> and 345–415 of <i>N0PilQ<sup>3...
<p><sup>a</sup> The values exclude data points from the first 1 ns of each simulation and used every...
<p>Left: GluK2-<i>trans</i> complex; right: GluK2-<i>cis</i> complex. Data obtained from five indepe...
<p>Proteins Cα (A), heavy atoms of NADPH cofactor (B) and substrate cortisone (C) are plotted as fun...
<p>a) RMSD values between initial (PREDDIMER predicted) structures across the subfamily of plexins c...
<p>Gray line: RMSD evaluated along the 250 ns of the MD-XR trajectory. Orange: RMSD evaluated along ...
<p>Prior to the RMSD calculation of each pair, the structures were aligned, taking into consideratio...
<p>We generated samples for each loop. The mean value of the minimum RMSD of the loops (-axis) is ...
<p>In (A), RMSD values from the whole construct (NS3<sub>PRO</sub> F, black line) were compared with...
<p>The Comparative diagram for various calculations of Backbone RMSD by regarding N-domain, C-domain...
<p>RMSD values of the backbone atoms relative to the initial minimized structures as functions of si...
<p>(A) is the D1-D2 domain, (B) the D3 domain and (C) heavy atoms of the ligands. The initial confor...
<p>Blue: RMSD values of the 20 homology models versus each other; Green: RMSD values of the 20 NMR s...
<p>For the complexes, the corresponding ligand RMSD-values are depicted as green curves.</p
<p>For each simulation, the heavy-atom RMSDs for the EL4 and IL2 loops and the entire protein with r...
*<p>RMSD based on residues 226–326 of <i>B2PilQ<sup>224–329</sup></i> and 345–415 of <i>N0PilQ<sup>3...
<p><sup>a</sup> The values exclude data points from the first 1 ns of each simulation and used every...
<p>Left: GluK2-<i>trans</i> complex; right: GluK2-<i>cis</i> complex. Data obtained from five indepe...
<p>Proteins Cα (A), heavy atoms of NADPH cofactor (B) and substrate cortisone (C) are plotted as fun...
<p>a) RMSD values between initial (PREDDIMER predicted) structures across the subfamily of plexins c...