<p>Blue: RMSD values of the 20 homology models versus each other; Green: RMSD values of the 20 NMR structures versus each other; Red: RMSD values of the 20 homology models versus 20 NMR structures; Purple: RMSD values of every structure of the homology model simulation versus every structure of the NMR simulation, using LBMC; Cyan: RMSD values of every structure of the homology model simulation versus every structure of the NMR simulation, using MD. The vertical black line indicates the starting RMSD value between the homology model and the NMR structures simulated by MD or LBMC.</p
<p>The histograms of the Aβ (black bars), Aβ-Dec-DETA (blue bars), and Aβ-Pep1b (green bars) systems...
<p>(<b>A</b>) RMSDs from the initial model coordinates (t = 0 ns) are computed for all Cα atoms (lef...
<p>RMSD values between Cα of SFTI-1, SFTI-FCQR Asp<sub>14</sub> and SFTI-FCQR Asn<sub>14</sub> durin...
<p>In (A), RMSD values from the whole construct (NS3<sub>PRO</sub> F, black line) were compared with...
<p>Partial RMSD evaluated after structure alignment over the backbone atoms of protein core residues...
<p>Gray line: RMSD evaluated along the 250 ns of the MD-XR trajectory. Orange: RMSD evaluated along ...
<p>Comparison of MD trajectories of RMSD values calculated for simulations that used (A) twin-range ...
<p>The RMSDs (in Å) per residue were calculated from trajectories 1 (red) and 2 (green) of MD simula...
<p>(a–b). Root-mean-square deviations (RMSD) of the backbone atoms for two independent MD simulation...
<p>The root-mean-square deviations (RMSDs) of MTHase backbone atoms (blue curve) and all the G<sub>3...
<p>(A) The MD simulations of 1-17-2 Fab and the 30 mutants. The curves indicate the RMSD value chang...
<p>RMSD values (Å) for LBMC simulation trajectories, from <a href="http://www.plosone.org/article/in...
<p>The potential energy and the RMSD of B16, C2, and C5 hexons in 10-ns MD simulation are shown on r...
<p>RMSD values (Å) for MD simulation trajectories, from <a href="http://www.plosone.org/article/info...
<p>(A) The Root Mean Square Fluctuations (RMSF) profile of RpfCc of the 60 ns MD simulation versus t...
<p>The histograms of the Aβ (black bars), Aβ-Dec-DETA (blue bars), and Aβ-Pep1b (green bars) systems...
<p>(<b>A</b>) RMSDs from the initial model coordinates (t = 0 ns) are computed for all Cα atoms (lef...
<p>RMSD values between Cα of SFTI-1, SFTI-FCQR Asp<sub>14</sub> and SFTI-FCQR Asn<sub>14</sub> durin...
<p>In (A), RMSD values from the whole construct (NS3<sub>PRO</sub> F, black line) were compared with...
<p>Partial RMSD evaluated after structure alignment over the backbone atoms of protein core residues...
<p>Gray line: RMSD evaluated along the 250 ns of the MD-XR trajectory. Orange: RMSD evaluated along ...
<p>Comparison of MD trajectories of RMSD values calculated for simulations that used (A) twin-range ...
<p>The RMSDs (in Å) per residue were calculated from trajectories 1 (red) and 2 (green) of MD simula...
<p>(a–b). Root-mean-square deviations (RMSD) of the backbone atoms for two independent MD simulation...
<p>The root-mean-square deviations (RMSDs) of MTHase backbone atoms (blue curve) and all the G<sub>3...
<p>(A) The MD simulations of 1-17-2 Fab and the 30 mutants. The curves indicate the RMSD value chang...
<p>RMSD values (Å) for LBMC simulation trajectories, from <a href="http://www.plosone.org/article/in...
<p>The potential energy and the RMSD of B16, C2, and C5 hexons in 10-ns MD simulation are shown on r...
<p>RMSD values (Å) for MD simulation trajectories, from <a href="http://www.plosone.org/article/info...
<p>(A) The Root Mean Square Fluctuations (RMSF) profile of RpfCc of the 60 ns MD simulation versus t...
<p>The histograms of the Aβ (black bars), Aβ-Dec-DETA (blue bars), and Aβ-Pep1b (green bars) systems...
<p>(<b>A</b>) RMSDs from the initial model coordinates (t = 0 ns) are computed for all Cα atoms (lef...
<p>RMSD values between Cα of SFTI-1, SFTI-FCQR Asp<sub>14</sub> and SFTI-FCQR Asn<sub>14</sub> durin...