<p>A sidechain contact is defined if the center of mass of sidechains between two residues is less than 6.0 Å. A hydrogen bond is defined if donor-acceptor distance is <3.5 Å and accepter-donor-hydrogen angle is >120°.</p
International audienceThree-dimensional structures of proteins are the support of their biological f...
<p>(<b>a</b>) and (<b>b</b>) show the hydrogen-bonding interactions provided by two WD<sub>b–a</sub>...
<p>These residues are basically hydrophobic in agreement with the relevance of this type of interact...
<p>(A) The contact map. (B) The side chain contact map for oppositely charged residues. The circles...
Top. For each residue, a reference backbone structure is aligned to the N, Cα, and C atomic coordina...
For clarity only small fragments of TM2 and TM7 are depicted as ribbons. Side chain atoms are depict...
<p>Hydrogen bonding of all valid and invalid ligands are compared across all residues that meet the ...
<p>(<b>A</b>) The contact map of the p53 residues with the HDM2 receptor in the crystal structure of...
<p>(A) All-atom sidechain model; (B) Simple isotropic sphere side chain model will cause spurious ov...
<p>(a) and (b) are contact maps showing the number of conformations where a contact was found betwee...
The geometry of interactions of planar residues is nonrandom in protein tertiary structures and give...
Although hydrophobic interaction is the main contributing factor to the stability of the protein fol...
A total of 19 835 polar residues from a data set of 250 non-homologous and highly resolved protein c...
The process of deducing the catalytic mechanism of an enzyme from its structure is highly complex an...
<p>Electrostatic interaction node maps generated from the results of the multi conformer continuum e...
International audienceThree-dimensional structures of proteins are the support of their biological f...
<p>(<b>a</b>) and (<b>b</b>) show the hydrogen-bonding interactions provided by two WD<sub>b–a</sub>...
<p>These residues are basically hydrophobic in agreement with the relevance of this type of interact...
<p>(A) The contact map. (B) The side chain contact map for oppositely charged residues. The circles...
Top. For each residue, a reference backbone structure is aligned to the N, Cα, and C atomic coordina...
For clarity only small fragments of TM2 and TM7 are depicted as ribbons. Side chain atoms are depict...
<p>Hydrogen bonding of all valid and invalid ligands are compared across all residues that meet the ...
<p>(<b>A</b>) The contact map of the p53 residues with the HDM2 receptor in the crystal structure of...
<p>(A) All-atom sidechain model; (B) Simple isotropic sphere side chain model will cause spurious ov...
<p>(a) and (b) are contact maps showing the number of conformations where a contact was found betwee...
The geometry of interactions of planar residues is nonrandom in protein tertiary structures and give...
Although hydrophobic interaction is the main contributing factor to the stability of the protein fol...
A total of 19 835 polar residues from a data set of 250 non-homologous and highly resolved protein c...
The process of deducing the catalytic mechanism of an enzyme from its structure is highly complex an...
<p>Electrostatic interaction node maps generated from the results of the multi conformer continuum e...
International audienceThree-dimensional structures of proteins are the support of their biological f...
<p>(<b>a</b>) and (<b>b</b>) show the hydrogen-bonding interactions provided by two WD<sub>b–a</sub>...
<p>These residues are basically hydrophobic in agreement with the relevance of this type of interact...