Heatmap and regulated chromatin remodeling genes.

<p><b>Left</b>: Row-normalized gene expression heatmap of A404 cells treated with all-trans retinoic acid for 96 hours, then puromycin for 48 hours, significant at FDR<1. Shown are 2,739 genes upregulated (P>C), and 2,227 genes downregulated (C>P). C = Control replicates, n = 6. P = Puromycin group replicates, n = 6. Green: down. Red: up. One gene/row. <b>Right</b>: Regulated chromatin remodeling genes during A404 differentiation. GO annotation terms for selected pairwise SAM comparisons (FDR<1) of treatment groups were obtained, using gene lists with unique names. Values are % of total set of 171 chromatin remodeling genes on array. Downregulated and Upregulated = vs. control A404 cells. RA48 and RA96 = RA-treated for 48 or 96 h. Puro = RA-treated 96 h, then puromycin-treated for 48 h.