<p>Results are for the 8,000 lowest-energy designed sequences, which are compared to their corresponding native template. The size of each symbol indicates the number of sequences with the corresponding energy (energies binned in 10 kcal/mol windows). Negative energies indicate stable folding of the designed sequences.</p
<p>The x-axis is the nucleotide sequence and the y-axis is the local folding free energy. The region...
From A to D, the Spearman’s rank coefficient between PA/mRNA and folding energies in the -30 to +30,...
Stating protein design as an energy minimization in the space of amino acid sequences and rotamer co...
<p>Results are for six protein templates (the six bars that appear for each energy term). From left ...
Database-derived potentials, compiled from frequencies of sequence and structure features, are often...
We present an analysis of the assumptions behind some of the most commonly used methods for evaluati...
The routine prediction of three-dimensional protein structure from sequence remains a challenge in c...
© 2011 Faver et al. This is an open-access article distributed under the terms of the Creative Commo...
fined by the spatial coordinates of a subset of its atoms, usually the C # - and/or C # -atoms....
<p>Results are shown for designed, native and HMM sequences, for two SH3 domains (1CKA, 1CSK), two S...
[著者版]In prediction of a protein main-chain structure into which a query sequence of amino acids fold...
<p>Enrichment Score, 10 best energy candidates, 100 best energy candidates, number of near-native st...
<p>(A) Cumulative distributions of folding free energies, Δ<i>G,</i> are shown for 5,888 ORFs for 5′...
<p>Data shown are for one million sequences of varied GC-content in comparison to normal unbiased se...
A Protein is a large molecule that consists of a vast number of atoms; one can only imagine the comp...
<p>The x-axis is the nucleotide sequence and the y-axis is the local folding free energy. The region...
From A to D, the Spearman’s rank coefficient between PA/mRNA and folding energies in the -30 to +30,...
Stating protein design as an energy minimization in the space of amino acid sequences and rotamer co...
<p>Results are for six protein templates (the six bars that appear for each energy term). From left ...
Database-derived potentials, compiled from frequencies of sequence and structure features, are often...
We present an analysis of the assumptions behind some of the most commonly used methods for evaluati...
The routine prediction of three-dimensional protein structure from sequence remains a challenge in c...
© 2011 Faver et al. This is an open-access article distributed under the terms of the Creative Commo...
fined by the spatial coordinates of a subset of its atoms, usually the C # - and/or C # -atoms....
<p>Results are shown for designed, native and HMM sequences, for two SH3 domains (1CKA, 1CSK), two S...
[著者版]In prediction of a protein main-chain structure into which a query sequence of amino acids fold...
<p>Enrichment Score, 10 best energy candidates, 100 best energy candidates, number of near-native st...
<p>(A) Cumulative distributions of folding free energies, Δ<i>G,</i> are shown for 5,888 ORFs for 5′...
<p>Data shown are for one million sequences of varied GC-content in comparison to normal unbiased se...
A Protein is a large molecule that consists of a vast number of atoms; one can only imagine the comp...
<p>The x-axis is the nucleotide sequence and the y-axis is the local folding free energy. The region...
From A to D, the Spearman’s rank coefficient between PA/mRNA and folding energies in the -30 to +30,...
Stating protein design as an energy minimization in the space of amino acid sequences and rotamer co...