Additional file 6: Table S6. of Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles

Additional file 8: of Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles

Rayner González-Prendes (4349755)
Raquel Quintanilla (168993)
Emilio Mármol-Sánchez (4349752)
Ramona Pena (6423104)
Maria Ballester (103767)
Tainã Cardoso (3585575)
Arianna Manunza (383157)
Joaquim Casellas (94879)
Ángela Cánovas (3391583)
Isabel Díaz (2698609)
José Noguera (6423107)
Anna Castelló (277282)
Anna Mercadé (383164)
Marcel Amills (168991)

March 2019

Table S7. Primer sequences used in the amplification of SNPs mapping to candidate genes located with...

Additional file 4: Table S2. of Dynamic transcriptome and DNA methylome analyses on longissimus dorsi to identify genes underlying intramuscular fat content in pigs

Yuding Wang (4511173)
Cai Ma (4511176)
Yi Sun (118759)
Yi Li (1144)
Li Kang (494757)
Yunliang Jiang (494758)

October 2017

The differentially expressed genes (DEGs) in 60 d vs 120 d, 120 d vs 240 d and 240 d vs 400d. We sho...

Additional file 3: of Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles

Rayner González-Prendes (4349755)
Raquel Quintanilla (168993)
Emilio Mármol-Sánchez (4349752)
Ramona Pena (6423104)
Maria Ballester (103767)
Tainã Cardoso (3585575)
Arianna Manunza (383157)
Joaquim Casellas (94879)
Ángela Cánovas (3391583)
Isabel Díaz (2698609)
José Noguera (6423107)
Anna Castelló (277282)
Anna Mercadé (383164)
Marcel Amills (168991)

March 2019

Figure S1. Genetic Power Calculator plots showing the power of the GWAS analysis (x-axis) for a popu...

Additional file 5: Table S5. of Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles

Tainã Cardoso (3585575)
Raquel Quintanilla (168993)
Anna Castelló (277282)
Rayner González-Prendes (4349755)
Marcel Amills (168991)
Ángela Cánovas (3391583)

February 2018

Differentially expressed (P-value < 0.05) mRNA isoforms (HIGH vs LOW pigs) found with CLC Bio and ST...

Additional file 1: Table S1. of Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles

Tainã Cardoso (3585575)
Raquel Quintanilla (168993)
Anna Castelló (277282)
Rayner González-Prendes (4349755)
Marcel Amills (168991)
Ángela Cánovas (3391583)

February 2018

Distribution of the 56 animals sequenced by RNA-seq in the 5 half-sib families reported by Gallardo ...

Additional file 1: of Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles

Rayner González-Prendes (4349755)
Raquel Quintanilla (168993)
Emilio Mármol-Sánchez (4349752)
Ramona Pena (6423104)
Maria Ballester (103767)
Tainã Cardoso (3585575)
Arianna Manunza (383157)
Joaquim Casellas (94879)
Ángela Cánovas (3391583)
Isabel Díaz (2698609)
José Noguera (6423107)
Anna Castelló (277282)
Anna Mercadé (383164)
Marcel Amills (168991)

March 2019

Table S1. List of genes differentially expressed between the gluteus medius and longissimus dorsi mu...

Additional file 4: Table S4. of Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles

Tainã Cardoso (3585575)
Raquel Quintanilla (168993)
Anna Castelló (277282)
Rayner González-Prendes (4349755)
Marcel Amills (168991)
Ángela Cánovas (3391583)

February 2018

Classification of alternative splicing (AS) events detected in the porcine gluteus medius muscle wit...

Additional file 2: of RNA-seq of muscle from pigs divergent in feed efficiency and product quality identifies differences in immune response, growth, and macronutrient and connective tissue metabolism

Justyna Horodyska (4102438)
Klaus Wimmers (82199)
Henry Reyer (137619)
Nares Trakooljul (723346)
Anne Mullen (5922770)
Peadar Lawlor (2820613)
Ruth Hamill (5922773)

November 2018

Table S2. Biological functions significantly enriched with differentially expressed genes, including...

Additional file 3: of RNA-seq of muscle from pigs divergent in feed efficiency and product quality identifies differences in immune response, growth, and macronutrient and connective tissue metabolism

Justyna Horodyska (4102438)
Klaus Wimmers (82199)
Henry Reyer (137619)
Nares Trakooljul (723346)
Anne Mullen (5922770)
Peadar Lawlor (2820613)
Ruth Hamill (5922773)

November 2018

Table S3. All canonical pathways significantly enriched with differentially expressed genes. (XLSX 1...

Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles

Figueiredo-Cardoso, T.
Quintanilla, Raquel
Castelló, Anna
González-Prendes, Rayner
Amills, Marcel
Cánovas, Ángela

January 2018

[Background]: The identification of genes differentially expressed in the skeletal muscle of pigs di...

Additional file 2: of Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles

Rayner González-Prendes (4349755)
Raquel Quintanilla (168993)
Emilio Mármol-Sánchez (4349752)
Ramona Pena (6423104)
Maria Ballester (103767)
Tainã Cardoso (3585575)
Arianna Manunza (383157)
Joaquim Casellas (94879)
Ángela Cánovas (3391583)
Isabel Díaz (2698609)
José Noguera (6423107)
Anna Castelló (277282)
Anna Mercadé (383164)
Marcel Amills (168991)

March 2019

Table S2. Pathway Enrichment for genes differentially expressed between the gluteus medius and longi...

Additional file 7: of Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles

Rayner González-Prendes (4349755)
Raquel Quintanilla (168993)
Emilio Mármol-Sánchez (4349752)
Ramona Pena (6423104)
Maria Ballester (103767)
Tainã Cardoso (3585575)
Arianna Manunza (383157)
Joaquim Casellas (94879)
Ángela Cánovas (3391583)
Isabel Díaz (2698609)
José Noguera (6423107)
Anna Castelló (277282)
Anna Mercadé (383164)
Marcel Amills (168991)

March 2019

Table S6. Means and standard deviations (SD) of intramuscular fat and composition traits recorded in...

Additional file 1: of A porcine gluteus medius muscle genome-wide transcriptome analysis: dietary effects of omega-6 and omega-3 fatty acids on biological mechanisms

Magdalena Ogłuszka (3440390)
Agnieszka Szostak (3110271)
Marinus te Pas (3440378)
Ewa Poławska (3440381)
Paweł Urbański (3440387)
Tadeusz Blicharski (3440384)
Chandra Pareek (3440372)
Edyta Juszczuk-Kubiak (3440375)
Jenelle Dunkelberger (3440393)
Jarosław Horbańczuk (3110307)
Mariusz Pierzchała (3110292)

January 2017

Heatmap of global expression levels of mRNA in the muscle of pigs from control group (M-high) and pi...

Additional file 5: of Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles

Rayner González-Prendes (4349755)
Raquel Quintanilla (168993)
Emilio Mármol-Sánchez (4349752)
Ramona Pena (6423104)
Maria Ballester (103767)
Tainã Cardoso (3585575)
Arianna Manunza (383157)
Joaquim Casellas (94879)
Ángela Cánovas (3391583)
Isabel Díaz (2698609)
José Noguera (6423107)
Anna Castelló (277282)
Anna Mercadé (383164)
Marcel Amills (168991)

March 2019

Table S4. Genes located within QTL regions retrieved from the list of genes showing differential exp...

Additional file 6: of Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles

Rayner González-Prendes (4349755)
Raquel Quintanilla (168993)
Emilio Mármol-Sánchez (4349752)
Ramona Pena (6423104)
Maria Ballester (103767)
Tainã Cardoso (3585575)
Arianna Manunza (383157)
Joaquim Casellas (94879)
Ángela Cánovas (3391583)
Isabel Díaz (2698609)
José Noguera (6423107)
Anna Castelló (277282)
Anna Mercadé (383164)
Marcel Amills (168991)

March 2019

Table S5. Correlations between the expression of genes regulated by cis-eQTL and the variation of ph...

Additional file 8: of Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles

Rayner González-Prendes (4349755)
Raquel Quintanilla (168993)
Emilio Mármol-Sánchez (4349752)
Ramona Pena (6423104)
Maria Ballester (103767)
Tainã Cardoso (3585575)
Arianna Manunza (383157)
Joaquim Casellas (94879)
Ángela Cánovas (3391583)
Isabel Díaz (2698609)
José Noguera (6423107)
Anna Castelló (277282)
Anna Mercadé (383164)
Marcel Amills (168991)

March 2019

Table S7. Primer sequences used in the amplification of SNPs mapping to candidate genes located with...

Additional file 4: Table S2. of Dynamic transcriptome and DNA methylome analyses on longissimus dorsi to identify genes underlying intramuscular fat content in pigs

Yuding Wang (4511173)
Cai Ma (4511176)
Yi Sun (118759)
Yi Li (1144)
Li Kang (494757)
Yunliang Jiang (494758)

October 2017

The differentially expressed genes (DEGs) in 60 d vs 120 d, 120 d vs 240 d and 240 d vs 400d. We sho...

Additional file 3: of Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles

Rayner González-Prendes (4349755)
Raquel Quintanilla (168993)
Emilio Mármol-Sánchez (4349752)
Ramona Pena (6423104)
Maria Ballester (103767)
Tainã Cardoso (3585575)
Arianna Manunza (383157)
Joaquim Casellas (94879)
Ángela Cánovas (3391583)
Isabel Díaz (2698609)
José Noguera (6423107)
Anna Castelló (277282)
Anna Mercadé (383164)
Marcel Amills (168991)

March 2019

Figure S1. Genetic Power Calculator plots showing the power of the GWAS analysis (x-axis) for a popu...

Additional file 5: Table S5. of Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles

Tainã Cardoso (3585575)
Raquel Quintanilla (168993)
Anna Castelló (277282)
Rayner González-Prendes (4349755)
Marcel Amills (168991)
Ángela Cánovas (3391583)

February 2018

Differentially expressed (P-value < 0.05) mRNA isoforms (HIGH vs LOW pigs) found with CLC Bio and ST...

Additional file 1: Table S1. of Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles

Tainã Cardoso (3585575)
Raquel Quintanilla (168993)
Anna Castelló (277282)
Rayner González-Prendes (4349755)
Marcel Amills (168991)
Ángela Cánovas (3391583)

February 2018

Distribution of the 56 animals sequenced by RNA-seq in the 5 half-sib families reported by Gallardo ...

Additional file 1: of Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles

Rayner González-Prendes (4349755)
Raquel Quintanilla (168993)
Emilio Mármol-Sánchez (4349752)
Ramona Pena (6423104)
Maria Ballester (103767)
Tainã Cardoso (3585575)
Arianna Manunza (383157)
Joaquim Casellas (94879)
Ángela Cánovas (3391583)
Isabel Díaz (2698609)
José Noguera (6423107)
Anna Castelló (277282)
Anna Mercadé (383164)
Marcel Amills (168991)

March 2019

Table S1. List of genes differentially expressed between the gluteus medius and longissimus dorsi mu...

Additional file 4: Table S4. of Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles

Tainã Cardoso (3585575)
Raquel Quintanilla (168993)
Anna Castelló (277282)
Rayner González-Prendes (4349755)
Marcel Amills (168991)
Ángela Cánovas (3391583)

February 2018

Classification of alternative splicing (AS) events detected in the porcine gluteus medius muscle wit...

Additional file 2: of RNA-seq of muscle from pigs divergent in feed efficiency and product quality identifies differences in immune response, growth, and macronutrient and connective tissue metabolism

Justyna Horodyska (4102438)
Klaus Wimmers (82199)
Henry Reyer (137619)
Nares Trakooljul (723346)
Anne Mullen (5922770)
Peadar Lawlor (2820613)
Ruth Hamill (5922773)

November 2018

Table S2. Biological functions significantly enriched with differentially expressed genes, including...

Additional file 3: of RNA-seq of muscle from pigs divergent in feed efficiency and product quality identifies differences in immune response, growth, and macronutrient and connective tissue metabolism

Justyna Horodyska (4102438)
Klaus Wimmers (82199)
Henry Reyer (137619)
Nares Trakooljul (723346)
Anne Mullen (5922770)
Peadar Lawlor (2820613)
Ruth Hamill (5922773)

November 2018

Table S3. All canonical pathways significantly enriched with differentially expressed genes. (XLSX 1...

Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles

Figueiredo-Cardoso, T.
Quintanilla, Raquel
Castelló, Anna
González-Prendes, Rayner
Amills, Marcel
Cánovas, Ángela

January 2018

[Background]: The identification of genes differentially expressed in the skeletal muscle of pigs di...

Additional file 2: of Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles

Rayner González-Prendes (4349755)
Raquel Quintanilla (168993)
Emilio Mármol-Sánchez (4349752)
Ramona Pena (6423104)
Maria Ballester (103767)
Tainã Cardoso (3585575)
Arianna Manunza (383157)
Joaquim Casellas (94879)
Ángela Cánovas (3391583)
Isabel Díaz (2698609)
José Noguera (6423107)
Anna Castelló (277282)
Anna Mercadé (383164)
Marcel Amills (168991)

March 2019

Table S2. Pathway Enrichment for genes differentially expressed between the gluteus medius and longi...

Additional file 7: of Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles

Rayner González-Prendes (4349755)
Raquel Quintanilla (168993)
Emilio Mármol-Sánchez (4349752)
Ramona Pena (6423104)
Maria Ballester (103767)
Tainã Cardoso (3585575)
Arianna Manunza (383157)
Joaquim Casellas (94879)
Ángela Cánovas (3391583)
Isabel Díaz (2698609)
José Noguera (6423107)
Anna Castelló (277282)
Anna Mercadé (383164)
Marcel Amills (168991)

March 2019

Table S6. Means and standard deviations (SD) of intramuscular fat and composition traits recorded in...

Additional file 1: of A porcine gluteus medius muscle genome-wide transcriptome analysis: dietary effects of omega-6 and omega-3 fatty acids on biological mechanisms

Magdalena Ogłuszka (3440390)
Agnieszka Szostak (3110271)
Marinus te Pas (3440378)
Ewa Poławska (3440381)
Paweł Urbański (3440387)
Tadeusz Blicharski (3440384)
Chandra Pareek (3440372)
Edyta Juszczuk-Kubiak (3440375)
Jenelle Dunkelberger (3440393)
Jarosław Horbańczuk (3110307)
Mariusz Pierzchała (3110292)

January 2017

Heatmap of global expression levels of mRNA in the muscle of pigs from control group (M-high) and pi...

Additional file 5: of Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles

Rayner González-Prendes (4349755)
Raquel Quintanilla (168993)
Emilio Mármol-Sánchez (4349752)
Ramona Pena (6423104)
Maria Ballester (103767)
Tainã Cardoso (3585575)
Arianna Manunza (383157)
Joaquim Casellas (94879)
Ángela Cánovas (3391583)
Isabel Díaz (2698609)
José Noguera (6423107)
Anna Castelló (277282)
Anna Mercadé (383164)
Marcel Amills (168991)

March 2019

Table S4. Genes located within QTL regions retrieved from the list of genes showing differential exp...

Additional file 6: of Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles

Rayner González-Prendes (4349755)
Raquel Quintanilla (168993)
Emilio Mármol-Sánchez (4349752)
Ramona Pena (6423104)
Maria Ballester (103767)
Tainã Cardoso (3585575)
Arianna Manunza (383157)
Joaquim Casellas (94879)
Ángela Cánovas (3391583)
Isabel Díaz (2698609)
José Noguera (6423107)
Anna Castelló (277282)
Anna Mercadé (383164)
Marcel Amills (168991)

March 2019

Table S5. Correlations between the expression of genes regulated by cis-eQTL and the variation of ph...

Additional file 8: of Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles

Rayner González-Prendes (4349755)
Raquel Quintanilla (168993)
Emilio Mármol-Sánchez (4349752)
Ramona Pena (6423104)
Maria Ballester (103767)
Tainã Cardoso (3585575)
Arianna Manunza (383157)
Joaquim Casellas (94879)
Ángela Cánovas (3391583)
Isabel Díaz (2698609)
José Noguera (6423107)
Anna Castelló (277282)
Anna Mercadé (383164)
Marcel Amills (168991)

March 2019

Table S7. Primer sequences used in the amplification of SNPs mapping to candidate genes located with...

Additional file 4: Table S2. of Dynamic transcriptome and DNA methylome analyses on longissimus dorsi to identify genes underlying intramuscular fat content in pigs

Yuding Wang (4511173)
Cai Ma (4511176)
Yi Sun (118759)
Yi Li (1144)
Li Kang (494757)
Yunliang Jiang (494758)

October 2017

The differentially expressed genes (DEGs) in 60 d vs 120 d, 120 d vs 240 d and 240 d vs 400d. We sho...

Additional file 3: of Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles

Rayner González-Prendes (4349755)
Raquel Quintanilla (168993)
Emilio Mármol-Sánchez (4349752)
Ramona Pena (6423104)
Maria Ballester (103767)
Tainã Cardoso (3585575)
Arianna Manunza (383157)
Joaquim Casellas (94879)
Ángela Cánovas (3391583)
Isabel Díaz (2698609)
José Noguera (6423107)
Anna Castelló (277282)
Anna Mercadé (383164)
Marcel Amills (168991)

March 2019

Figure S1. Genetic Power Calculator plots showing the power of the GWAS analysis (x-axis) for a popu...

Additional file 6: Table S6. of Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles

Abstract

Extracted data

Additional file 6: Table S6. of Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles

Abstract

Extracted data

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