Additional file 3: of RNA-seq of muscle from pigs divergent in feed efficiency and product quality identifies differences in immune response, growth, and macronutrient and connective tissue metabolism

Data_Sheet_3_RNA-Seq of Liver From Pigs Divergent in Feed Efficiency Highlights Shifts in Macronutrient Metabolism, Hepatic Growth and Immune Response.PDF

Justyna Horodyska (4102438)
Ruth M. Hamill (3181491)
Henry Reyer (137619)
Nares Trakooljul (723346)
Peadar G. Lawlor (166400)
Ursula M. McCormack (3907393)
Klaus Wimmers (82199)

February 2019

Liver is a metabolically complex organ that influences nutrient partitioning and potentially modulat...

Additional file 2: of Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles

Rayner González-Prendes (4349755)
Raquel Quintanilla (168993)
Emilio Mármol-Sánchez (4349752)
Ramona Pena (6423104)
Maria Ballester (103767)
Tainã Cardoso (3585575)
Arianna Manunza (383157)
Joaquim Casellas (94879)
Ángela Cánovas (3391583)
Isabel Díaz (2698609)
José Noguera (6423107)
Anna Castelló (277282)
Anna Mercadé (383164)
Marcel Amills (168991)

March 2019

Table S2. Pathway Enrichment for genes differentially expressed between the gluteus medius and longi...

Differences in muscle transcriptome among pigs phenotypically extreme for fatty acid composition

Puig-Oliveras, A.
Ramayo-Caldas, Y.
Corominas, J.
Estelle, J.
Perez-Montarelo, D.
Hudson, N.J.
Casellas, J.
Folch Maria Ballester, J.M.

January 2014

Contains fulltext : 137788.pdf (publisher's version ) (Open Access)BACKGROUND: Bes...

Additional file 2: of RNA-seq of muscle from pigs divergent in feed efficiency and product quality identifies differences in immune response, growth, and macronutrient and connective tissue metabolism

Justyna Horodyska (4102438)
Klaus Wimmers (82199)
Henry Reyer (137619)
Nares Trakooljul (723346)
Anne Mullen (5922770)
Peadar Lawlor (2820613)
Ruth Hamill (5922773)

November 2018

Table S2. Biological functions significantly enriched with differentially expressed genes, including...

Additional file 4: of RNA-seq of muscle from pigs divergent in feed efficiency and product quality identifies differences in immune response, growth, and macronutrient and connective tissue metabolism

Justyna Horodyska (4102438)
Klaus Wimmers (82199)
Henry Reyer (137619)
Nares Trakooljul (723346)
Anne Mullen (5922770)
Peadar Lawlor (2820613)
Ruth Hamill (5922773)

November 2018

Table S4. Forward and reverse primers for RNA-seq validation through qPCR. (DOCX 16 kb

Additional file 1: Table S1. of Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles

Tainã Cardoso (3585575)
Raquel Quintanilla (168993)
Anna Castelló (277282)
Rayner González-Prendes (4349755)
Marcel Amills (168991)
Ángela Cánovas (3391583)

February 2018

Distribution of the 56 animals sequenced by RNA-seq in the 5 half-sib families reported by Gallardo ...

RNA-seq of muscle from pigs divergent in feed efficiency and product quality identifies differences in immune response, growth, and macronutrient and connective tissue metabolism

Horodyska, Justyna
Wimmers, Klaus
Reyer, Henry
Trakooljul, Nares
Mullen, Anne Maria
Lawlor, Peadar G.
Hamill, Ruth M.

November 2018

Background: Feed efficiency (FE) is an indicator of efficiency in converting energy and nutrients fr...

Additional file 1: of A porcine gluteus medius muscle genome-wide transcriptome analysis: dietary effects of omega-6 and omega-3 fatty acids on biological mechanisms

Magdalena Ogłuszka (3440390)
Agnieszka Szostak (3110271)
Marinus te Pas (3440378)
Ewa Poławska (3440381)
Paweł Urbański (3440387)
Tadeusz Blicharski (3440384)
Chandra Pareek (3440372)
Edyta Juszczuk-Kubiak (3440375)
Jenelle Dunkelberger (3440393)
Jarosław Horbańczuk (3110307)
Mariusz Pierzchała (3110292)

January 2017

Heatmap of global expression levels of mRNA in the muscle of pigs from control group (M-high) and pi...

Additional file 6: Table S6. of Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles

Tainã Cardoso (3585575)
Raquel Quintanilla (168993)
Anna Castelló (277282)
Rayner González-Prendes (4349755)
Marcel Amills (168991)
Ángela Cánovas (3391583)

February 2018

Relative transcript levels of a set of isoforms corresponding to five genes expressed in the gluteus...

Additional file 10: of A transcriptome multi-tissue analysis identifies biological pathways and genes associated with variations in feed efficiency of growing pigs

Florence Gondret (768085)
Annie Vincent (176703)
Magalie Houée-Bigot (3464441)
Anne Siegel (205003)
Sandrine Lagarrigue (214977)
David Causeur (3443027)
Hélène Gilbert (407257)
Isabelle Louveau (844631)

March 2017

Genes participating to relevant GO biological processes specifically in adipose tissues. (DOCX 22 kb

A transcriptome multi-tissue analysis identifies biological pathways and genes associated with variations in feed efficiency of growing pigs

Gondret, Florence
Vincent, Annie
Houée-Bigot, Magalie
Siegel, Anne
Lagarrigue, Sandrine
Causeur, David
Gilbert, Hélène
Louveau, Isabelle

January 2017

International audienceBackground - Animal's efficiency in converting feed into lean gain is a critic...

Additional file 2: of Genetic control of longissimus dorsi muscle gene expression variation and joint analysis with phenotypic quantitative trait loci in pigs

Deborah Velez-Irizarry (6173753)
Sebastian Casiro (6173756)
Kaitlyn Daza (6173759)
Ronald Bates (6173762)
Nancy Raney (6173765)
Juan Steibel (6173768)
Catherine Ernst (5766908)

January 2019

Figure S1. Manhattan plots illustrating classification of different types of gene expression regulat...

Additional file 3: of Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles

Rayner González-Prendes (4349755)
Raquel Quintanilla (168993)
Emilio Mármol-Sánchez (4349752)
Ramona Pena (6423104)
Maria Ballester (103767)
Tainã Cardoso (3585575)
Arianna Manunza (383157)
Joaquim Casellas (94879)
Ángela Cánovas (3391583)
Isabel Díaz (2698609)
José Noguera (6423107)
Anna Castelló (277282)
Anna Mercadé (383164)
Marcel Amills (168991)

March 2019

Figure S1. Genetic Power Calculator plots showing the power of the GWAS analysis (x-axis) for a popu...

Additional file 5: Table S5. of Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles

Tainã Cardoso (3585575)
Raquel Quintanilla (168993)
Anna Castelló (277282)
Rayner González-Prendes (4349755)
Marcel Amills (168991)
Ángela Cánovas (3391583)

February 2018

Differentially expressed (P-value < 0.05) mRNA isoforms (HIGH vs LOW pigs) found with CLC Bio and ST...

Additional file 3: Figure S2. of Dynamic transcriptome and DNA methylome analyses on longissimus dorsi to identify genes underlying intramuscular fat content in pigs

Yuding Wang (4511173)
Cai Ma (4511176)
Yi Sun (118759)
Yi Li (1144)
Li Kang (494757)
Yunliang Jiang (494758)

October 2017

The differentially expressed genes and functions associated with muscle metabolism in profile 1, 3 a...

Data_Sheet_3_RNA-Seq of Liver From Pigs Divergent in Feed Efficiency Highlights Shifts in Macronutrient Metabolism, Hepatic Growth and Immune Response.PDF

Justyna Horodyska (4102438)
Ruth M. Hamill (3181491)
Henry Reyer (137619)
Nares Trakooljul (723346)
Peadar G. Lawlor (166400)
Ursula M. McCormack (3907393)
Klaus Wimmers (82199)

February 2019

Liver is a metabolically complex organ that influences nutrient partitioning and potentially modulat...

Additional file 2: of Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles

Rayner González-Prendes (4349755)
Raquel Quintanilla (168993)
Emilio Mármol-Sánchez (4349752)
Ramona Pena (6423104)
Maria Ballester (103767)
Tainã Cardoso (3585575)
Arianna Manunza (383157)
Joaquim Casellas (94879)
Ángela Cánovas (3391583)
Isabel Díaz (2698609)
José Noguera (6423107)
Anna Castelló (277282)
Anna Mercadé (383164)
Marcel Amills (168991)

March 2019

Table S2. Pathway Enrichment for genes differentially expressed between the gluteus medius and longi...

Differences in muscle transcriptome among pigs phenotypically extreme for fatty acid composition

Puig-Oliveras, A.
Ramayo-Caldas, Y.
Corominas, J.
Estelle, J.
Perez-Montarelo, D.
Hudson, N.J.
Casellas, J.
Folch Maria Ballester, J.M.

January 2014

Contains fulltext : 137788.pdf (publisher's version ) (Open Access)BACKGROUND: Bes...

Additional file 2: of RNA-seq of muscle from pigs divergent in feed efficiency and product quality identifies differences in immune response, growth, and macronutrient and connective tissue metabolism

Justyna Horodyska (4102438)
Klaus Wimmers (82199)
Henry Reyer (137619)
Nares Trakooljul (723346)
Anne Mullen (5922770)
Peadar Lawlor (2820613)
Ruth Hamill (5922773)

November 2018

Table S2. Biological functions significantly enriched with differentially expressed genes, including...

Additional file 4: of RNA-seq of muscle from pigs divergent in feed efficiency and product quality identifies differences in immune response, growth, and macronutrient and connective tissue metabolism

Justyna Horodyska (4102438)
Klaus Wimmers (82199)
Henry Reyer (137619)
Nares Trakooljul (723346)
Anne Mullen (5922770)
Peadar Lawlor (2820613)
Ruth Hamill (5922773)

November 2018

Table S4. Forward and reverse primers for RNA-seq validation through qPCR. (DOCX 16 kb

Additional file 1: Table S1. of Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles

Tainã Cardoso (3585575)
Raquel Quintanilla (168993)
Anna Castelló (277282)
Rayner González-Prendes (4349755)
Marcel Amills (168991)
Ángela Cánovas (3391583)

February 2018

Distribution of the 56 animals sequenced by RNA-seq in the 5 half-sib families reported by Gallardo ...

RNA-seq of muscle from pigs divergent in feed efficiency and product quality identifies differences in immune response, growth, and macronutrient and connective tissue metabolism

Horodyska, Justyna
Wimmers, Klaus
Reyer, Henry
Trakooljul, Nares
Mullen, Anne Maria
Lawlor, Peadar G.
Hamill, Ruth M.

November 2018

Background: Feed efficiency (FE) is an indicator of efficiency in converting energy and nutrients fr...

Additional file 1: of A porcine gluteus medius muscle genome-wide transcriptome analysis: dietary effects of omega-6 and omega-3 fatty acids on biological mechanisms

Magdalena Ogłuszka (3440390)
Agnieszka Szostak (3110271)
Marinus te Pas (3440378)
Ewa Poławska (3440381)
Paweł Urbański (3440387)
Tadeusz Blicharski (3440384)
Chandra Pareek (3440372)
Edyta Juszczuk-Kubiak (3440375)
Jenelle Dunkelberger (3440393)
Jarosław Horbańczuk (3110307)
Mariusz Pierzchała (3110292)

January 2017

Heatmap of global expression levels of mRNA in the muscle of pigs from control group (M-high) and pi...

Additional file 6: Table S6. of Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles

Tainã Cardoso (3585575)
Raquel Quintanilla (168993)
Anna Castelló (277282)
Rayner González-Prendes (4349755)
Marcel Amills (168991)
Ángela Cánovas (3391583)

February 2018

Relative transcript levels of a set of isoforms corresponding to five genes expressed in the gluteus...

Additional file 10: of A transcriptome multi-tissue analysis identifies biological pathways and genes associated with variations in feed efficiency of growing pigs

Florence Gondret (768085)
Annie Vincent (176703)
Magalie Houée-Bigot (3464441)
Anne Siegel (205003)
Sandrine Lagarrigue (214977)
David Causeur (3443027)
Hélène Gilbert (407257)
Isabelle Louveau (844631)

March 2017

Genes participating to relevant GO biological processes specifically in adipose tissues. (DOCX 22 kb

A transcriptome multi-tissue analysis identifies biological pathways and genes associated with variations in feed efficiency of growing pigs

Gondret, Florence
Vincent, Annie
Houée-Bigot, Magalie
Siegel, Anne
Lagarrigue, Sandrine
Causeur, David
Gilbert, Hélène
Louveau, Isabelle

January 2017

International audienceBackground - Animal's efficiency in converting feed into lean gain is a critic...

Additional file 2: of Genetic control of longissimus dorsi muscle gene expression variation and joint analysis with phenotypic quantitative trait loci in pigs

Deborah Velez-Irizarry (6173753)
Sebastian Casiro (6173756)
Kaitlyn Daza (6173759)
Ronald Bates (6173762)
Nancy Raney (6173765)
Juan Steibel (6173768)
Catherine Ernst (5766908)

January 2019

Figure S1. Manhattan plots illustrating classification of different types of gene expression regulat...

Additional file 3: of Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles

Rayner González-Prendes (4349755)
Raquel Quintanilla (168993)
Emilio Mármol-Sánchez (4349752)
Ramona Pena (6423104)
Maria Ballester (103767)
Tainã Cardoso (3585575)
Arianna Manunza (383157)
Joaquim Casellas (94879)
Ángela Cánovas (3391583)
Isabel Díaz (2698609)
José Noguera (6423107)
Anna Castelló (277282)
Anna Mercadé (383164)
Marcel Amills (168991)

March 2019

Figure S1. Genetic Power Calculator plots showing the power of the GWAS analysis (x-axis) for a popu...

Additional file 5: Table S5. of Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles

Tainã Cardoso (3585575)
Raquel Quintanilla (168993)
Anna Castelló (277282)
Rayner González-Prendes (4349755)
Marcel Amills (168991)
Ángela Cánovas (3391583)

February 2018

Differentially expressed (P-value < 0.05) mRNA isoforms (HIGH vs LOW pigs) found with CLC Bio and ST...

Additional file 3: Figure S2. of Dynamic transcriptome and DNA methylome analyses on longissimus dorsi to identify genes underlying intramuscular fat content in pigs

Yuding Wang (4511173)
Cai Ma (4511176)
Yi Sun (118759)
Yi Li (1144)
Li Kang (494757)
Yunliang Jiang (494758)

October 2017

The differentially expressed genes and functions associated with muscle metabolism in profile 1, 3 a...

Data_Sheet_3_RNA-Seq of Liver From Pigs Divergent in Feed Efficiency Highlights Shifts in Macronutrient Metabolism, Hepatic Growth and Immune Response.PDF

Justyna Horodyska (4102438)
Ruth M. Hamill (3181491)
Henry Reyer (137619)
Nares Trakooljul (723346)
Peadar G. Lawlor (166400)
Ursula M. McCormack (3907393)
Klaus Wimmers (82199)

February 2019

Liver is a metabolically complex organ that influences nutrient partitioning and potentially modulat...

Additional file 2: of Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles

Rayner González-Prendes (4349755)
Raquel Quintanilla (168993)
Emilio Mármol-Sánchez (4349752)
Ramona Pena (6423104)
Maria Ballester (103767)
Tainã Cardoso (3585575)
Arianna Manunza (383157)
Joaquim Casellas (94879)
Ángela Cánovas (3391583)
Isabel Díaz (2698609)
José Noguera (6423107)
Anna Castelló (277282)
Anna Mercadé (383164)
Marcel Amills (168991)

March 2019

Table S2. Pathway Enrichment for genes differentially expressed between the gluteus medius and longi...

Differences in muscle transcriptome among pigs phenotypically extreme for fatty acid composition

Puig-Oliveras, A.
Ramayo-Caldas, Y.
Corominas, J.
Estelle, J.
Perez-Montarelo, D.
Hudson, N.J.
Casellas, J.
Folch Maria Ballester, J.M.

January 2014

Contains fulltext : 137788.pdf (publisher's version ) (Open Access)BACKGROUND: Bes...

Additional file 3: of RNA-seq of muscle from pigs divergent in feed efficiency and product quality identifies differences in immune response, growth, and macronutrient and connective tissue metabolism

Abstract

Extracted data

Additional file 3: of RNA-seq of muscle from pigs divergent in feed efficiency and product quality identifies differences in immune response, growth, and macronutrient and connective tissue metabolism

Abstract

Extracted data

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