OTU table, representative sequences, and metadata from combined Baxter, Zeller, and Zackular studies (colorectal cancer case-control datasets). These data were processed using a standardized workflow (97% clustering of the V4 region of the 16S gene). For details see the preprint: https://www.biorxiv.org/content/early/2018/02/11/165910<br
Thesis (Master's)--University of Washington, 2019Progress in high throughput sequencing has facilita...
The expression microarray is a frequently used approach to study gene expression on a genome-wide sc...
<p>Non-metric multidimensional scaling (NMDS) plot showing the distribution of healthy controls from...
High-throughput data generation platforms, like mass-spectrometry, microarrays, and second-generatio...
Next-Generation Sequencing (NGS) has made it possible to perform metagenomic sequencing of environme...
High-throughput data generation platforms, like mass-spectrometry, microarrays, and second-generatio...
<p>Differences in OTU composition at an individual datapoint. There were 90 620 bacterial 16S rRNA g...
The microbiome has become a focus of research, particularly in the field of human health and precisi...
Background: Microbiota profiles are strongly influenced by many technical aspects that impact the ab...
Batch effect correction improves dataset quality. NMDS plot (A) based on filtered, normalized read c...
Motivation: International consortia such as the Genotype-Tissue Expression (GTEx) project, The Cance...
OTU clustering methods perform variably when all OTUs are included. As visualized in Fig. 4, the num...
Figure S4. (A) The precision and its corresponding recall index under different cut-off. The optimal...
Control samples for 16S rRNA gene sequencing. A Qiime generated OTU table for the positive and negat...
Relative abundances of operational taxonomic units (OTUs) in infant microbiome samples. Raw 16S rRNA...
Thesis (Master's)--University of Washington, 2019Progress in high throughput sequencing has facilita...
The expression microarray is a frequently used approach to study gene expression on a genome-wide sc...
<p>Non-metric multidimensional scaling (NMDS) plot showing the distribution of healthy controls from...
High-throughput data generation platforms, like mass-spectrometry, microarrays, and second-generatio...
Next-Generation Sequencing (NGS) has made it possible to perform metagenomic sequencing of environme...
High-throughput data generation platforms, like mass-spectrometry, microarrays, and second-generatio...
<p>Differences in OTU composition at an individual datapoint. There were 90 620 bacterial 16S rRNA g...
The microbiome has become a focus of research, particularly in the field of human health and precisi...
Background: Microbiota profiles are strongly influenced by many technical aspects that impact the ab...
Batch effect correction improves dataset quality. NMDS plot (A) based on filtered, normalized read c...
Motivation: International consortia such as the Genotype-Tissue Expression (GTEx) project, The Cance...
OTU clustering methods perform variably when all OTUs are included. As visualized in Fig. 4, the num...
Figure S4. (A) The precision and its corresponding recall index under different cut-off. The optimal...
Control samples for 16S rRNA gene sequencing. A Qiime generated OTU table for the positive and negat...
Relative abundances of operational taxonomic units (OTUs) in infant microbiome samples. Raw 16S rRNA...
Thesis (Master's)--University of Washington, 2019Progress in high throughput sequencing has facilita...
The expression microarray is a frequently used approach to study gene expression on a genome-wide sc...
<p>Non-metric multidimensional scaling (NMDS) plot showing the distribution of healthy controls from...