<p>Each system consists of 10 lipids (top: DPhPC and bottom: DOPC), 418 water molecules for DPhPC-1 and DPhPC-2 or 358 water molecules for both DOPC-1 and DOPC-2 water molecules, and one excess proton. Water molecules and the hydrocarbon tails are rendered in sticks. Oxygen is in red, hydrogen in white, carbon in green, nitrogen in blue and phosphorus in yellow. Phosphate groups and the hydronium are depicted as spheres. The protonated phosphate group is highlighted in blue (DPhPC-1, DOPC-1). The interfacial hydronium is highlighted in green (DPhPC-2, DOPC-2).</p
<p>The protein is shown as cartoon (green), lipid molecule hydrophobic tails as sticks (cyan) and li...
We present the results of molecular dynamics (MD) simulations of a phospholipid membrane in water, i...
We present the results of molecular dynamics (MD) simulations of a phospholipid membrane in water, i...
<p>The snapshots are taken at 1 ps when the excess proton is > 6 Å from its nearest phosphate (a); a...
MD simulations of four phosphatidylcholine bilayers and monolayers with different acyl chains. The C...
<p>The left part shows the entire simulation domain with dimensions . Starting from top and bottom, ...
TM helix dimer buried in lipid bilayer is shown in purple. The CG beads of phosphate and choline gro...
The bilayer is composed of the lipid DOPC, which has two hydrophobic tails (white) and a zwitterioni...
<p>For each system, we describe the name of the system, the name of MD runs, the number of lipid and...
<p>A) A typical starting configuration for npc2 in the water phase, above the membrane. B) Final con...
<div><p>(Left) A top-down view of the simulated system alongside several periodic images. The simula...
Snapshots of CG simulations of 1000 lipid molecules at two different water contents using the HC mod...
<p>Two distinct DPPC lipid monolayers enclose a water phase (illustrated by single water molecules i...
Molecular dynamics simulations are used to provide a detailed investigation of the hydrogen bond net...
We present the results of molecular dynamics (MD) simulations of a phospholipid membrane in water, i...
<p>The protein is shown as cartoon (green), lipid molecule hydrophobic tails as sticks (cyan) and li...
We present the results of molecular dynamics (MD) simulations of a phospholipid membrane in water, i...
We present the results of molecular dynamics (MD) simulations of a phospholipid membrane in water, i...
<p>The snapshots are taken at 1 ps when the excess proton is > 6 Å from its nearest phosphate (a); a...
MD simulations of four phosphatidylcholine bilayers and monolayers with different acyl chains. The C...
<p>The left part shows the entire simulation domain with dimensions . Starting from top and bottom, ...
TM helix dimer buried in lipid bilayer is shown in purple. The CG beads of phosphate and choline gro...
The bilayer is composed of the lipid DOPC, which has two hydrophobic tails (white) and a zwitterioni...
<p>For each system, we describe the name of the system, the name of MD runs, the number of lipid and...
<p>A) A typical starting configuration for npc2 in the water phase, above the membrane. B) Final con...
<div><p>(Left) A top-down view of the simulated system alongside several periodic images. The simula...
Snapshots of CG simulations of 1000 lipid molecules at two different water contents using the HC mod...
<p>Two distinct DPPC lipid monolayers enclose a water phase (illustrated by single water molecules i...
Molecular dynamics simulations are used to provide a detailed investigation of the hydrogen bond net...
We present the results of molecular dynamics (MD) simulations of a phospholipid membrane in water, i...
<p>The protein is shown as cartoon (green), lipid molecule hydrophobic tails as sticks (cyan) and li...
We present the results of molecular dynamics (MD) simulations of a phospholipid membrane in water, i...
We present the results of molecular dynamics (MD) simulations of a phospholipid membrane in water, i...