<div><p>(Left) A top-down view of the simulated system alongside several periodic images. The simulation cell boundaries are drawn in black around the central image. Lipid headgroup phosphorus and nitrogen atoms are shown as orange spheres, and lipid chains are light blue lines. The AmtB trimer is colored by monomer.</p><p>(Right) A side view of the central simulation cell. Water is shown as red points, Cl<sup>−</sup> ions are shown as green spheres, and NH<sub>4</sub><sup>+</sup> ions are shown in a space-filling representation (nitrogen is blue and hydrogens are white).</p></div
<p>The protein is shown as cartoon (green), lipid molecule hydrophobic tails as sticks (cyan) and li...
<p>For each system, we describe the name of the system, the name of MD runs, the number of lipid and...
<p>The cell is a cylinder divided by a virtual membrane perpendicular to the cylinder’s axis of rota...
<div><p>(A) Centers of mass of ionic species on each leaflet of the biomembrane as a function of tim...
<p>Each system consists of 10 lipids (top: DPhPC and bottom: DOPC), 418 water molecules for DPhPC-1 ...
<p>(<b>A</b>) A setup of a molecular dynamics simulation. A simulation system is composed of <i>Ps. ...
<p>(A) The native membrane system in the simulation box after 10 μs simulation is shown. All water m...
MD simulations of four phosphatidylcholine bilayers and monolayers with different acyl chains. The C...
<p>A) A typical starting configuration for npc2 in the water phase, above the membrane. B) Final con...
<p>The left part shows the entire simulation domain with dimensions . Starting from top and bottom, ...
<p>(A) Plasma membrane composed of 6000 lipids. The same color scheme as Fig. 1 has been applied. (B...
A: Cut-plane views during simulation of two fluid-filled compartments separated by a deformable memb...
<p>A) X-ray structure of CETP from the side (left) and bottom (right). Two DOPCs (grey and blue sphe...
A: Cut-plane views during simulation of two fluid-filled compartments separated by a deformable memb...
<p>The protein is shown in cartoon representation with explicit depiction of positively charged resi...
<p>The protein is shown as cartoon (green), lipid molecule hydrophobic tails as sticks (cyan) and li...
<p>For each system, we describe the name of the system, the name of MD runs, the number of lipid and...
<p>The cell is a cylinder divided by a virtual membrane perpendicular to the cylinder’s axis of rota...
<div><p>(A) Centers of mass of ionic species on each leaflet of the biomembrane as a function of tim...
<p>Each system consists of 10 lipids (top: DPhPC and bottom: DOPC), 418 water molecules for DPhPC-1 ...
<p>(<b>A</b>) A setup of a molecular dynamics simulation. A simulation system is composed of <i>Ps. ...
<p>(A) The native membrane system in the simulation box after 10 μs simulation is shown. All water m...
MD simulations of four phosphatidylcholine bilayers and monolayers with different acyl chains. The C...
<p>A) A typical starting configuration for npc2 in the water phase, above the membrane. B) Final con...
<p>The left part shows the entire simulation domain with dimensions . Starting from top and bottom, ...
<p>(A) Plasma membrane composed of 6000 lipids. The same color scheme as Fig. 1 has been applied. (B...
A: Cut-plane views during simulation of two fluid-filled compartments separated by a deformable memb...
<p>A) X-ray structure of CETP from the side (left) and bottom (right). Two DOPCs (grey and blue sphe...
A: Cut-plane views during simulation of two fluid-filled compartments separated by a deformable memb...
<p>The protein is shown in cartoon representation with explicit depiction of positively charged resi...
<p>The protein is shown as cartoon (green), lipid molecule hydrophobic tails as sticks (cyan) and li...
<p>For each system, we describe the name of the system, the name of MD runs, the number of lipid and...
<p>The cell is a cylinder divided by a virtual membrane perpendicular to the cylinder’s axis of rota...