Comparison of SNPs recovered in this study using different thresholds of sequence coverage (4- and 15-fold) with HapMap SNPs.

Crawford, Douglas L.

September 2015

Filter SNP (955 SNP) for 122 collected from five populations in the spring of 2014. These 955 SNP in...

Comparison of standard sequencing and SMOR analysis.

Rebecca E. Colman (254707)
James M. Schupp (193214)
Nathan D. Hicks (738349)
David E. Smith (632855)
Jordan L. Buchhagen (176952)
Faramarz Valafar (23005)
Valeriu Crudu (704924)
Elena Romancenco (738350)
Ecaterina Noroc (738351)
Lynn Jackson (235591)
Donald G. Catanzaro (175160)
Timothy C. Rodwell (175176)
Antonino Catanzaro (175168)
Paul Keim (69765)
David M. Engelthaler (117020)

May 2015

The percentage of base calls for the resistant allele compared to the erroneous alleles at six re...

Direct comparison of results for HVR-I sequencing and AmericaPlex26 SNP typing assay for samples unambiguously typed using the AmericaPlex26 assay.

Alexandra Coutinho (543202)
Guido Valverde (543203)
Lars Fehren-Schmitz (543204)
Alan Cooper (9827)
Maria Inés Barreto Romero (543205)
Isabel Flores Espinoza (543206)
Bastien Llamas (187276)
Wolfgang Haak (237986)

March 2014

Consensus haplogroups were called based on last common SNP from both replicates from independent ...

The number of SNPs in each TMCC prevalence range with a statistically significant different PAF than HapMap CEU or CHD MAFs.

Lyle G. Best (215594)
Cindy M. Anderson (441658)
Richa Saxena (28290)
Berta Almoguera (455510)
Hareesh Chandrupatla (455511)
Candelaria Martin (441660)
Gilbert Falcon (441659)
Kylie Keplin (441662)
Nichole Pearson (441663)
Brendan J. Keating (113690)

September 2013

The number of SNPs in each TMCC prevalence range with a statistically significant different PAF t...

Numbers of homozygous and heterozygous SNPs identified in NA12782 at different sequence coverage thresholds.

Sergey I. Nikolaev (78347)
Christian Iseli (21532)
Andrew J. Sharp (141304)
Daniel Robyr (228615)
Jacques Rougemont (69360)
Corinne Gehrig (228622)
Laurent Farinelli (131838)
Stylianos E. Antonarakis (138831)

February 2013

Numbers of homozygous and heterozygous SNPs identified in NA12782 at different sequence coverage ...

Comparison of genotype and allele frequencies in the control subjects of our study and those from the HapMap Project.

Liling Huang (1627294)
Cunxu Liu (3158952)
Yan Deng (159032)
Yanqiong Liu (640974)
Jiangyang Zhao (641414)
Xiuli Huang (3158955)
Wenjun Tang (1672960)
Yifan Sun (734245)
Xue Qin (123365)
Shan Li (110392)

July 2016

Comparison of genotype and allele frequencies in the control subjects of our study and those from...

Comparison between the number of SSR primers and the number of detected SNPs within the genic and the Intergenic regions in the date palm genome.

Morad M. Mokhtar (3150969)
Sami S. Adawy (3150966)
Salah El-Din S. El-Assal (3150972)
Ebtissam H. A. Hussein (3150975)

July 2016

Comparison between the number of SSR primers and the number of detected SNPs within the genic and...

Comparison of different scanning regions and theoretical coverage of genes.

Xin Jin (108988)
Mingze He (146863)
Betsy Ferguson (146864)
Yuhuan Meng (146867)
Limei Ouyang (146870)
Jingjing Ren (146874)
Thomas Mailund (51584)
Fei Sun (102854)
Liangdan Sun (146882)
Juan Shen (146888)
Min Zhuo (47045)
Li Song (34475)
Jufang Wang (91185)
Fei Ling (146901)
Yuqi Zhu (146909)
Christina Hvilsom (146917)
Hans Siegismund (146923)
Xiaoming Liu (47653)
Zhuolin Gong (146933)
Fang Ji (41541)
Xinzhong Wang (146942)
Boqing Liu (146948)
Yu Zhang (12946)
Jianguo Hou (146954)
Jing Wang (4865)
Hua Zhao (122671)
Yanyi Wang (146955)
Xiaodong Fang (146960)
Guojie Zhang (146963)
Jian Wang (5901)
Xuejun Zhang (68138)
Mikkel H. Schierup (53286)
Hongli Du (91186)
Jun Wang (5906)
Xiaoning Wang (16150)

July 2012

Summary of theoretical analysis for target region, target orthologous region and target orthologo...

How well do HapMap haplotypes identify common haplotypes of genes? A comparison of 334 genes reseequenced in the environmental genome project. Cancer Epidemiol Biomarkers Prev

Jack A. Taylor
Zong-li Xu
Norman L. Kaplan
Richard W. Morris

January 2006

One of the goals of the International HapMap Project is the identification of common haplotypes in g...

Impact of SNP types on the likelihood of disease association.

Rong Chen (29176)
Eugene V. Davydov (235973)
Marina Sirota (87296)
Atul J. Butte (159385)

February 2013

For each of the nine SNP types, the likelihood of disease associations was estimated as the perce...

Genotype concordance for SNP calls in a PCL-tumour sample and a HapMap (NA12813) sample.

Iwanka Kozarewa (179955)
Juan Manuel Rosa-Rosa (81749)
Christopher P. Wardell (179958)
Brian A. Walker (179961)
Kerry Fenwick (41196)
Ioannis Assiotis (179964)
Costas Mitsopoulos (179968)
Marketa Zvelebil (13881)
Gareth J. Morgan (179971)
Alan Ashworth (1270)
Christopher J. (179974)

March 2012

For the PCL-tumour sample, the variants called by deep sequencing were compared to data from Affy...

Comparison of SNP numbers and frequency estimate accuracy revealed by Pool-seq and by GBS.

Marco Fracassetti (812668)
Philippa C. Griffin (812669)
Yvonne Willi (657152)

October 2015

Columns report: library/lane identity (population A or B, estimation of sequencing depth per indi...

Relationship between number of sequence reads, missing data, sequencing depth and the number of SNP calls.

Martin Mascher (466076)
Shuangye Wu (466077)
Paul St. Amand (466078)
Nils Stein (132658)
Jesse Poland (454316)

October 2013

(a) The average percentage of missing data per SNP in each sequenced sample is plotted as ...

Comparison of haplotype frequencies of five SNPs located in the ABCA1, APOA1, and LCAT genes between the case and control groups.

Xinping Wang (306022)
Heng Guo (215190)
Yu Li (183836)
Haixia Wang (173360)
Jia He (89641)
Lati Mu (2266855)
Yunhua Hu (5215919)
Jiaolong Ma (399813)
Yizhong Yan (802336)
Shugang Li (530554)
Yusong Ding (625781)
Mei Zhang (46138)
Qiang Niu (625783)
Jiaming Liu (187759)
Jingyu Zhang (256203)
Rulin Ma (625784)
Shuxia Guo (625780)

May 2018

Comparison of haplotype frequencies of five SNPs located in the ABCA1, APOA1, and LCAT genes betw...

SNP calling and statistical metrics.

Wei Wang (17594)
Jia Gan (5614121)
Donghui Fang (5614124)
Hui Tang (226667)
Huai Wang (2545135)
Jun Yi (839345)
Maozhong Fu (3851086)

August 2018

The call rates of SNPs (A) were first revealed among 55 samples after our hard filtering. The per...

SF_955_hapmap

Crawford, Douglas L.

September 2015

Filter SNP (955 SNP) for 122 collected from five populations in the spring of 2014. These 955 SNP in...

Comparison of standard sequencing and SMOR analysis.

Rebecca E. Colman (254707)
James M. Schupp (193214)
Nathan D. Hicks (738349)
David E. Smith (632855)
Jordan L. Buchhagen (176952)
Faramarz Valafar (23005)
Valeriu Crudu (704924)
Elena Romancenco (738350)
Ecaterina Noroc (738351)
Lynn Jackson (235591)
Donald G. Catanzaro (175160)
Timothy C. Rodwell (175176)
Antonino Catanzaro (175168)
Paul Keim (69765)
David M. Engelthaler (117020)

May 2015

The percentage of base calls for the resistant allele compared to the erroneous alleles at six re...

Direct comparison of results for HVR-I sequencing and AmericaPlex26 SNP typing assay for samples unambiguously typed using the AmericaPlex26 assay.

Alexandra Coutinho (543202)
Guido Valverde (543203)
Lars Fehren-Schmitz (543204)
Alan Cooper (9827)
Maria Inés Barreto Romero (543205)
Isabel Flores Espinoza (543206)
Bastien Llamas (187276)
Wolfgang Haak (237986)

March 2014

Consensus haplogroups were called based on last common SNP from both replicates from independent ...

The number of SNPs in each TMCC prevalence range with a statistically significant different PAF than HapMap CEU or CHD MAFs.

Lyle G. Best (215594)
Cindy M. Anderson (441658)
Richa Saxena (28290)
Berta Almoguera (455510)
Hareesh Chandrupatla (455511)
Candelaria Martin (441660)
Gilbert Falcon (441659)
Kylie Keplin (441662)
Nichole Pearson (441663)
Brendan J. Keating (113690)

September 2013

The number of SNPs in each TMCC prevalence range with a statistically significant different PAF t...

Numbers of homozygous and heterozygous SNPs identified in NA12782 at different sequence coverage thresholds.

Sergey I. Nikolaev (78347)
Christian Iseli (21532)
Andrew J. Sharp (141304)
Daniel Robyr (228615)
Jacques Rougemont (69360)
Corinne Gehrig (228622)
Laurent Farinelli (131838)
Stylianos E. Antonarakis (138831)

February 2013

Numbers of homozygous and heterozygous SNPs identified in NA12782 at different sequence coverage ...

Comparison of genotype and allele frequencies in the control subjects of our study and those from the HapMap Project.

Liling Huang (1627294)
Cunxu Liu (3158952)
Yan Deng (159032)
Yanqiong Liu (640974)
Jiangyang Zhao (641414)
Xiuli Huang (3158955)
Wenjun Tang (1672960)
Yifan Sun (734245)
Xue Qin (123365)
Shan Li (110392)

July 2016

Comparison of genotype and allele frequencies in the control subjects of our study and those from...

Comparison between the number of SSR primers and the number of detected SNPs within the genic and the Intergenic regions in the date palm genome.

Morad M. Mokhtar (3150969)
Sami S. Adawy (3150966)
Salah El-Din S. El-Assal (3150972)
Ebtissam H. A. Hussein (3150975)

July 2016

Comparison between the number of SSR primers and the number of detected SNPs within the genic and...

Comparison of different scanning regions and theoretical coverage of genes.

Xin Jin (108988)
Mingze He (146863)
Betsy Ferguson (146864)
Yuhuan Meng (146867)
Limei Ouyang (146870)
Jingjing Ren (146874)
Thomas Mailund (51584)
Fei Sun (102854)
Liangdan Sun (146882)
Juan Shen (146888)
Min Zhuo (47045)
Li Song (34475)
Jufang Wang (91185)
Fei Ling (146901)
Yuqi Zhu (146909)
Christina Hvilsom (146917)
Hans Siegismund (146923)
Xiaoming Liu (47653)
Zhuolin Gong (146933)
Fang Ji (41541)
Xinzhong Wang (146942)
Boqing Liu (146948)
Yu Zhang (12946)
Jianguo Hou (146954)
Jing Wang (4865)
Hua Zhao (122671)
Yanyi Wang (146955)
Xiaodong Fang (146960)
Guojie Zhang (146963)
Jian Wang (5901)
Xuejun Zhang (68138)
Mikkel H. Schierup (53286)
Hongli Du (91186)
Jun Wang (5906)
Xiaoning Wang (16150)

July 2012

Summary of theoretical analysis for target region, target orthologous region and target orthologo...

How well do HapMap haplotypes identify common haplotypes of genes? A comparison of 334 genes reseequenced in the environmental genome project. Cancer Epidemiol Biomarkers Prev

Jack A. Taylor
Zong-li Xu
Norman L. Kaplan
Richard W. Morris

January 2006

One of the goals of the International HapMap Project is the identification of common haplotypes in g...

Impact of SNP types on the likelihood of disease association.

Rong Chen (29176)
Eugene V. Davydov (235973)
Marina Sirota (87296)
Atul J. Butte (159385)

February 2013

For each of the nine SNP types, the likelihood of disease associations was estimated as the perce...

Genotype concordance for SNP calls in a PCL-tumour sample and a HapMap (NA12813) sample.

Iwanka Kozarewa (179955)
Juan Manuel Rosa-Rosa (81749)
Christopher P. Wardell (179958)
Brian A. Walker (179961)
Kerry Fenwick (41196)
Ioannis Assiotis (179964)
Costas Mitsopoulos (179968)
Marketa Zvelebil (13881)
Gareth J. Morgan (179971)
Alan Ashworth (1270)
Christopher J. (179974)

March 2012

For the PCL-tumour sample, the variants called by deep sequencing were compared to data from Affy...

Comparison of SNP numbers and frequency estimate accuracy revealed by Pool-seq and by GBS.

Marco Fracassetti (812668)
Philippa C. Griffin (812669)
Yvonne Willi (657152)

October 2015

Columns report: library/lane identity (population A or B, estimation of sequencing depth per indi...

Relationship between number of sequence reads, missing data, sequencing depth and the number of SNP calls.

Martin Mascher (466076)
Shuangye Wu (466077)
Paul St. Amand (466078)
Nils Stein (132658)
Jesse Poland (454316)

October 2013

(a) The average percentage of missing data per SNP in each sequenced sample is plotted as ...

Comparison of haplotype frequencies of five SNPs located in the ABCA1, APOA1, and LCAT genes between the case and control groups.

Xinping Wang (306022)
Heng Guo (215190)
Yu Li (183836)
Haixia Wang (173360)
Jia He (89641)
Lati Mu (2266855)
Yunhua Hu (5215919)
Jiaolong Ma (399813)
Yizhong Yan (802336)
Shugang Li (530554)
Yusong Ding (625781)
Mei Zhang (46138)
Qiang Niu (625783)
Jiaming Liu (187759)
Jingyu Zhang (256203)
Rulin Ma (625784)
Shuxia Guo (625780)

May 2018

Comparison of haplotype frequencies of five SNPs located in the ABCA1, APOA1, and LCAT genes betw...

SNP calling and statistical metrics.

Wei Wang (17594)
Jia Gan (5614121)
Donghui Fang (5614124)
Hui Tang (226667)
Huai Wang (2545135)
Jun Yi (839345)
Maozhong Fu (3851086)

August 2018

The call rates of SNPs (A) were first revealed among 55 samples after our hard filtering. The per...

SF_955_hapmap

Crawford, Douglas L.

September 2015

Filter SNP (955 SNP) for 122 collected from five populations in the spring of 2014. These 955 SNP in...

Comparison of standard sequencing and SMOR analysis.

Rebecca E. Colman (254707)
James M. Schupp (193214)
Nathan D. Hicks (738349)
David E. Smith (632855)
Jordan L. Buchhagen (176952)
Faramarz Valafar (23005)
Valeriu Crudu (704924)
Elena Romancenco (738350)
Ecaterina Noroc (738351)
Lynn Jackson (235591)
Donald G. Catanzaro (175160)
Timothy C. Rodwell (175176)
Antonino Catanzaro (175168)
Paul Keim (69765)
David M. Engelthaler (117020)

May 2015

The percentage of base calls for the resistant allele compared to the erroneous alleles at six re...

Direct comparison of results for HVR-I sequencing and AmericaPlex26 SNP typing assay for samples unambiguously typed using the AmericaPlex26 assay.

Alexandra Coutinho (543202)
Guido Valverde (543203)
Lars Fehren-Schmitz (543204)
Alan Cooper (9827)
Maria Inés Barreto Romero (543205)
Isabel Flores Espinoza (543206)
Bastien Llamas (187276)
Wolfgang Haak (237986)

March 2014

Consensus haplogroups were called based on last common SNP from both replicates from independent ...

Comparison of SNPs recovered in this study using different thresholds of sequence coverage (4- and 15-fold) with HapMap SNPs.

Abstract

Extracted data

Comparison of SNPs recovered in this study using different thresholds of sequence coverage (4- and 15-fold) with HapMap SNPs.

Abstract

Extracted data

Topics

Related items

Topics

Related items