Parsimony analysis of macroarray data for isolates from family A.

<p>Bootstrap values above 70% are indicated at each node. Strain numbers and genotypes are indicated. Five strains (S6 to S10) were individualized. Strain S6 and S10 were clearly different from the other strains, according to their CDS content and their <i>hspA</i> and <i>glmM</i> alleles. Absence (−) or presence (+) of CDS considered as character changes in the parsimonious analysis are given for each node and peripheral branch. IS are shown when present. <i>cag</i>PAI is present in all the strains, except strain S6 from the father. Names in bold indicate CDSs of known function (<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0002259#pone-0002259-t001" target="_blank">Table 1</a>). Names in italics indicate remnant genes.